Strain Fitness in Pseudomonas putida KT2440 around PP_0036

Experiment: Growth at pH8 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0034 and PP_0035 overlap by 35 nucleotidesPP_0035 and PP_0036 are separated by 257 nucleotidesPP_0036 and PP_0037 are separated by 228 nucleotides PP_0034: PP_0034 - putative bactoprenol glycosyl-transferase from phage origin, at 37,646 to 38,629 _0034 PP_0035: PP_0035 - putative bactoprenol-linked glycose transferase, at 38,595 to 39,014 _0035 PP_0036: PP_0036 - putative transcriptional regulator, at 39,272 to 40,240 _0036 PP_0037: PP_0037 - porin P, at 40,469 to 41,758 _0037 Position (kb) 39 40 41Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 38.275 kb on - strand, within PP_0034at 38.358 kb on - strand, within PP_0034at 38.414 kb on + strand, within PP_0034at 38.414 kb on + strand, within PP_0034at 38.414 kb on + strand, within PP_0034at 38.415 kb on - strand, within PP_0034at 38.415 kb on - strand, within PP_0034at 38.464 kb on + strand, within PP_0034at 38.465 kb on - strand, within PP_0034at 38.481 kb on + strand, within PP_0034at 38.481 kb on + strand, within PP_0034at 38.585 kb on + strandat 38.618 kb on + strandat 38.618 kb on + strandat 38.619 kb on - strandat 38.619 kb on - strandat 38.619 kb on - strandat 38.619 kb on - strandat 38.679 kb on + strand, within PP_0035at 38.738 kb on + strand, within PP_0035at 38.898 kb on - strand, within PP_0035at 38.922 kb on + strand, within PP_0035at 38.923 kb on - strand, within PP_0035at 39.087 kb on + strandat 39.112 kb on + strandat 39.204 kb on - strandat 39.271 kb on - strandat 39.295 kb on + strandat 39.295 kb on + strandat 39.296 kb on - strandat 39.314 kb on + strandat 39.348 kb on - strandat 39.433 kb on - strand, within PP_0036at 39.492 kb on - strand, within PP_0036at 39.542 kb on + strand, within PP_0036at 39.543 kb on - strand, within PP_0036at 39.543 kb on - strand, within PP_0036at 39.543 kb on - strand, within PP_0036at 39.607 kb on + strand, within PP_0036at 39.608 kb on - strand, within PP_0036at 39.608 kb on - strand, within PP_0036at 39.775 kb on + strand, within PP_0036at 39.776 kb on - strand, within PP_0036at 39.799 kb on + strand, within PP_0036at 39.799 kb on + strand, within PP_0036at 39.799 kb on + strand, within PP_0036at 39.799 kb on + strand, within PP_0036at 39.799 kb on + strand, within PP_0036at 39.799 kb on + strand, within PP_0036at 39.799 kb on + strand, within PP_0036at 39.799 kb on + strand, within PP_0036at 39.800 kb on - strand, within PP_0036at 39.800 kb on - strand, within PP_0036at 39.800 kb on - strand, within PP_0036at 39.803 kb on + strand, within PP_0036at 39.803 kb on + strand, within PP_0036at 39.804 kb on - strand, within PP_0036at 39.804 kb on - strand, within PP_0036at 39.805 kb on + strand, within PP_0036at 39.805 kb on + strand, within PP_0036at 39.806 kb on - strand, within PP_0036at 39.806 kb on - strand, within PP_0036at 39.806 kb on - strand, within PP_0036at 39.806 kb on - strand, within PP_0036at 39.907 kb on - strand, within PP_0036at 40.007 kb on + strand, within PP_0036at 40.007 kb on + strand, within PP_0036at 40.007 kb on + strand, within PP_0036at 40.014 kb on + strand, within PP_0036at 40.046 kb on - strand, within PP_0036at 40.064 kb on + strand, within PP_0036at 40.087 kb on + strand, within PP_0036at 40.088 kb on - strand, within PP_0036at 40.136 kb on + strand, within PP_0036at 40.295 kb on + strandat 40.323 kb on + strandat 40.409 kb on - strandat 40.436 kb on + strandat 40.498 kb on - strandat 40.501 kb on - strandat 40.501 kb on - strandat 40.588 kb on - strandat 40.697 kb on + strand, within PP_0037at 40.698 kb on - strand, within PP_0037at 40.737 kb on - strand, within PP_0037at 40.751 kb on + strand, within PP_0037at 40.763 kb on + strand, within PP_0037at 40.763 kb on + strand, within PP_0037at 40.764 kb on - strand, within PP_0037at 40.764 kb on - strand, within PP_0037at 40.764 kb on - strand, within PP_0037at 40.764 kb on - strand, within PP_0037at 40.764 kb on - strand, within PP_0037at 40.764 kb on - strand, within PP_0037at 40.803 kb on - strand, within PP_0037at 40.826 kb on + strand, within PP_0037at 40.826 kb on + strand, within PP_0037at 40.827 kb on - strand, within PP_0037at 40.827 kb on - strand, within PP_0037at 40.868 kb on + strand, within PP_0037at 40.869 kb on - strand, within PP_0037at 40.869 kb on - strand, within PP_0037at 40.937 kb on + strand, within PP_0037at 40.938 kb on - strand, within PP_0037at 41.012 kb on + strand, within PP_0037at 41.012 kb on + strand, within PP_0037at 41.012 kb on + strand, within PP_0037at 41.012 kb on + strand, within PP_0037at 41.012 kb on + strand, within PP_0037at 41.013 kb on - strand, within PP_0037at 41.013 kb on - strand, within PP_0037at 41.044 kb on + strand, within PP_0037at 41.075 kb on + strand, within PP_0037at 41.082 kb on + strand, within PP_0037at 41.082 kb on + strand, within PP_0037at 41.082 kb on + strand, within PP_0037at 41.082 kb on + strand, within PP_0037at 41.082 kb on + strand, within PP_0037at 41.082 kb on + strand, within PP_0037at 41.082 kb on + strand, within PP_0037at 41.082 kb on + strand, within PP_0037at 41.083 kb on - strand, within PP_0037at 41.083 kb on - strand, within PP_0037at 41.083 kb on - strand, within PP_0037at 41.083 kb on - strand, within PP_0037at 41.141 kb on + strand, within PP_0037at 41.141 kb on + strand, within PP_0037at 41.142 kb on - strand, within PP_0037at 41.212 kb on - strand, within PP_0037at 41.212 kb on - strand, within PP_0037at 41.215 kb on + strand, within PP_0037at 41.215 kb on + strand, within PP_0037at 41.215 kb on + strand, within PP_0037at 41.216 kb on - strand, within PP_0037at 41.216 kb on - strand, within PP_0037at 41.216 kb on - strand, within PP_0037at 41.216 kb on - strand, within PP_0037

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH8 and (C) Trisodium citrate
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38,275 - PP_0034 0.64 -0.8
38,358 - PP_0034 0.72 +1.1
38,414 + PP_0034 0.78 -0.7
38,414 + PP_0034 0.78 -1.5
38,414 + PP_0034 0.78 -0.0
38,415 - PP_0034 0.78 +0.9
38,415 - PP_0034 0.78 -1.3
38,464 + PP_0034 0.83 +1.1
38,465 - PP_0034 0.83 -0.9
38,481 + PP_0034 0.85 -0.9
38,481 + PP_0034 0.85 -1.6
38,585 + +0.2
38,618 + -0.5
38,618 + +0.2
38,619 - +0.7
38,619 - +0.2
38,619 - -1.4
38,619 - +1.0
38,679 + PP_0035 0.20 +2.0
38,738 + PP_0035 0.34 +0.2
38,898 - PP_0035 0.72 -1.8
38,922 + PP_0035 0.78 -0.2
38,923 - PP_0035 0.78 +0.5
39,087 + -0.8
39,112 + -0.9
39,204 - +0.1
39,271 - +0.8
39,295 + -0.7
39,295 + +1.3
39,296 - -1.3
39,314 + +0.3
39,348 - -3.1
39,433 - PP_0036 0.17 +0.8
39,492 - PP_0036 0.23 +1.6
39,542 + PP_0036 0.28 -0.6
39,543 - PP_0036 0.28 -3.0
39,543 - PP_0036 0.28 -3.5
39,543 - PP_0036 0.28 +0.5
39,607 + PP_0036 0.35 -0.1
39,608 - PP_0036 0.35 -2.4
39,608 - PP_0036 0.35 -2.1
39,775 + PP_0036 0.52 -1.6
39,776 - PP_0036 0.52 +0.5
39,799 + PP_0036 0.54 +0.7
39,799 + PP_0036 0.54 +0.1
39,799 + PP_0036 0.54 -1.2
39,799 + PP_0036 0.54 +0.0
39,799 + PP_0036 0.54 -0.2
39,799 + PP_0036 0.54 -4.5
39,799 + PP_0036 0.54 +1.3
39,799 + PP_0036 0.54 -0.3
39,800 - PP_0036 0.54 -0.3
39,800 - PP_0036 0.54 -1.4
39,800 - PP_0036 0.54 +1.0
39,803 + PP_0036 0.55 +1.2
39,803 + PP_0036 0.55 +1.6
39,804 - PP_0036 0.55 -4.0
39,804 - PP_0036 0.55 -0.3
39,805 + PP_0036 0.55 -0.5
39,805 + PP_0036 0.55 -0.9
39,806 - PP_0036 0.55 -1.8
39,806 - PP_0036 0.55 +0.4
39,806 - PP_0036 0.55 -0.7
39,806 - PP_0036 0.55 +0.6
39,907 - PP_0036 0.66 -1.1
40,007 + PP_0036 0.76 -2.5
40,007 + PP_0036 0.76 -2.6
40,007 + PP_0036 0.76 -0.3
40,014 + PP_0036 0.77 -0.5
40,046 - PP_0036 0.80 -1.1
40,064 + PP_0036 0.82 +0.7
40,087 + PP_0036 0.84 -3.2
40,088 - PP_0036 0.84 -2.4
40,136 + PP_0036 0.89 -1.4
40,295 + +1.4
40,323 + +0.8
40,409 - +1.5
40,436 + -0.3
40,498 - -1.4
40,501 - +2.1
40,501 - -0.9
40,588 - -0.8
40,697 + PP_0037 0.18 +0.4
40,698 - PP_0037 0.18 +0.1
40,737 - PP_0037 0.21 -1.5
40,751 + PP_0037 0.22 -0.6
40,763 + PP_0037 0.23 -3.6
40,763 + PP_0037 0.23 +0.5
40,764 - PP_0037 0.23 +1.3
40,764 - PP_0037 0.23 +1.5
40,764 - PP_0037 0.23 -2.1
40,764 - PP_0037 0.23 -1.9
40,764 - PP_0037 0.23 -0.2
40,764 - PP_0037 0.23 +1.0
40,803 - PP_0037 0.26 +0.5
40,826 + PP_0037 0.28 -1.3
40,826 + PP_0037 0.28 +1.3
40,827 - PP_0037 0.28 -3.2
40,827 - PP_0037 0.28 +1.2
40,868 + PP_0037 0.31 +0.3
40,869 - PP_0037 0.31 +0.6
40,869 - PP_0037 0.31 +0.9
40,937 + PP_0037 0.36 +0.8
40,938 - PP_0037 0.36 +0.9
41,012 + PP_0037 0.42 +0.2
41,012 + PP_0037 0.42 -2.8
41,012 + PP_0037 0.42 +0.6
41,012 + PP_0037 0.42 -0.0
41,012 + PP_0037 0.42 +0.2
41,013 - PP_0037 0.42 +0.9
41,013 - PP_0037 0.42 -0.0
41,044 + PP_0037 0.45 -0.1
41,075 + PP_0037 0.47 -1.2
41,082 + PP_0037 0.48 -2.4
41,082 + PP_0037 0.48 -0.9
41,082 + PP_0037 0.48 +1.1
41,082 + PP_0037 0.48 +0.4
41,082 + PP_0037 0.48 -4.1
41,082 + PP_0037 0.48 -1.4
41,082 + PP_0037 0.48 -0.3
41,082 + PP_0037 0.48 -0.3
41,083 - PP_0037 0.48 -3.5
41,083 - PP_0037 0.48 -0.7
41,083 - PP_0037 0.48 +1.4
41,083 - PP_0037 0.48 +0.2
41,141 + PP_0037 0.52 +0.8
41,141 + PP_0037 0.52 -2.3
41,142 - PP_0037 0.52 +0.4
41,212 - PP_0037 0.58 +0.5
41,212 - PP_0037 0.58 +0.0
41,215 + PP_0037 0.58 -0.0
41,215 + PP_0037 0.58 +0.7
41,215 + PP_0037 0.58 +1.1
41,216 - PP_0037 0.58 +0.7
41,216 - PP_0037 0.58 +0.2
41,216 - PP_0037 0.58 +1.8
41,216 - PP_0037 0.58 +0.3

Or see this region's nucleotide sequence