Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-tyrosine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03150 and PS417_03155 are separated by 145 nucleotides PS417_03155 and PS417_03160 overlap by 4 nucleotides
PS417_03150: PS417_03150 - kinase, at 723,269 to 724,165
_03150
PS417_03155: PS417_03155 - transcriptional regulator, at 724,311 to 724,712
_03155
PS417_03160: PS417_03160 - metal ABC transporter ATPase, at 724,709 to 726,910
_03160
Position (kb) 724
725 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 723.362 kb on + strand, within PS417_03150 at 723.362 kb on + strand, within PS417_03150 at 723.362 kb on + strand, within PS417_03150 at 723.362 kb on + strand, within PS417_03150 at 723.362 kb on + strand, within PS417_03150 at 723.363 kb on - strand, within PS417_03150 at 723.621 kb on + strand, within PS417_03150 at 723.621 kb on + strand, within PS417_03150 at 723.685 kb on - strand, within PS417_03150 at 723.838 kb on - strand, within PS417_03150 at 723.903 kb on - strand, within PS417_03150 at 723.966 kb on - strand, within PS417_03150 at 723.997 kb on - strand, within PS417_03150 at 723.997 kb on - strand, within PS417_03150 at 724.294 kb on + strand at 724.566 kb on - strand, within PS417_03155 at 724.600 kb on - strand, within PS417_03155 at 724.654 kb on + strand, within PS417_03155 at 724.654 kb on + strand, within PS417_03155 at 724.860 kb on + strand at 724.860 kb on + strand at 724.899 kb on + strand at 724.900 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-tyrosine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 723,362 + PS417_03150 0.10 +0.3 723,362 + PS417_03150 0.10 -1.8 723,362 + PS417_03150 0.10 -0.1 723,362 + PS417_03150 0.10 -0.5 723,362 + PS417_03150 0.10 -0.4 723,363 - PS417_03150 0.10 +1.1 723,621 + PS417_03150 0.39 +0.7 723,621 + PS417_03150 0.39 -0.0 723,685 - PS417_03150 0.46 +3.0 723,838 - PS417_03150 0.63 -0.7 723,903 - PS417_03150 0.71 -0.2 723,966 - PS417_03150 0.78 +0.0 723,997 - PS417_03150 0.81 +0.7 723,997 - PS417_03150 0.81 -1.7 724,294 + -0.0 724,566 - PS417_03155 0.63 -0.3 724,600 - PS417_03155 0.72 -1.0 724,654 + PS417_03155 0.85 -0.2 724,654 + PS417_03155 0.85 -2.1 724,860 + +0.1 724,860 + -0.2 724,899 + -0.9 724,900 - -0.6
Or see this region's nucleotide sequence