Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-tyrosine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_28275 and PS417_28280 are separated by 44 nucleotides PS417_28280 and PS417_28285 overlap by 1 nucleotides PS417_28285 and PS417_28290 are separated by 27 nucleotides PS417_28290 and PS417_28295 are separated by 126 nucleotides PS417_28295 and PS417_28300 overlap by 4 nucleotides
PS417_28275: PS417_28275 - cobalamin biosynthesis protein CobW, at 6,106,538 to 6,107,500
_28275
PS417_28280: PS417_28280 - hypothetical protein, at 6,107,545 to 6,108,189
_28280
PS417_28285: PS417_28285 - hypothetical protein, at 6,108,189 to 6,109,397
_28285
PS417_28290: PS417_28290 - molecular chaperone DnaK, at 6,109,425 to 6,109,829
_28290
PS417_28295: PS417_28295 - glutamine synthetase, at 6,109,956 to 6,110,324
_28295
PS417_28300: PS417_28300 - N-acetylmuramoyl-L-alanine amidase, at 6,110,321 to 6,111,523
_28300
Position (kb)
6108
6109
6110 Strain fitness (log2 ratio)
-2
-1
0
1 at 6107.243 kb on - strand, within PS417_28275 at 6107.265 kb on - strand, within PS417_28275 at 6107.538 kb on + strand at 6107.539 kb on - strand at 6107.539 kb on - strand at 6107.622 kb on - strand, within PS417_28280 at 6107.774 kb on + strand, within PS417_28280 at 6107.775 kb on - strand, within PS417_28280 at 6107.860 kb on - strand, within PS417_28280 at 6107.928 kb on - strand, within PS417_28280 at 6108.208 kb on + strand at 6108.208 kb on + strand at 6108.425 kb on + strand, within PS417_28285 at 6108.426 kb on - strand, within PS417_28285 at 6108.503 kb on + strand, within PS417_28285 at 6108.504 kb on - strand, within PS417_28285 at 6109.023 kb on - strand, within PS417_28285 at 6109.091 kb on + strand, within PS417_28285 at 6109.327 kb on + strand at 6109.328 kb on - strand at 6109.328 kb on - strand at 6109.328 kb on - strand at 6109.402 kb on + strand at 6109.402 kb on + strand at 6109.403 kb on - strand at 6109.440 kb on - strand at 6109.789 kb on + strand at 6109.790 kb on - strand at 6109.790 kb on - strand at 6109.790 kb on - strand at 6109.885 kb on - strand at 6109.962 kb on + strand at 6109.962 kb on + strand at 6109.962 kb on + strand at 6109.962 kb on + strand at 6109.963 kb on - strand at 6110.085 kb on + strand, within PS417_28295 at 6110.085 kb on + strand, within PS417_28295 at 6110.085 kb on + strand, within PS417_28295 at 6110.115 kb on + strand, within PS417_28295 at 6110.115 kb on + strand, within PS417_28295 at 6110.309 kb on + strand at 6110.309 kb on + strand at 6110.310 kb on - strand at 6110.322 kb on + strand at 6110.361 kb on + strand at 6110.361 kb on + strand at 6110.361 kb on + strand at 6110.361 kb on + strand at 6110.361 kb on + strand at 6110.362 kb on - strand at 6110.362 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-tyrosine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 6,107,243 - PS417_28275 0.73 -0.2 6,107,265 - PS417_28275 0.75 -0.2 6,107,538 + -0.4 6,107,539 - -0.2 6,107,539 - +0.3 6,107,622 - PS417_28280 0.12 +0.8 6,107,774 + PS417_28280 0.36 +1.5 6,107,775 - PS417_28280 0.36 -0.8 6,107,860 - PS417_28280 0.49 -0.5 6,107,928 - PS417_28280 0.59 +0.1 6,108,208 + -0.4 6,108,208 + -0.4 6,108,425 + PS417_28285 0.20 -0.2 6,108,426 - PS417_28285 0.20 -0.2 6,108,503 + PS417_28285 0.26 -1.4 6,108,504 - PS417_28285 0.26 -1.5 6,109,023 - PS417_28285 0.69 +0.2 6,109,091 + PS417_28285 0.75 -0.6 6,109,327 + +0.7 6,109,328 - +0.2 6,109,328 - +1.3 6,109,328 - +1.1 6,109,402 + +0.1 6,109,402 + -0.5 6,109,403 - +1.3 6,109,440 - -2.1 6,109,789 + +1.5 6,109,790 - +0.5 6,109,790 - -0.7 6,109,790 - -0.9 6,109,885 - -0.0 6,109,962 + -0.3 6,109,962 + +0.2 6,109,962 + -0.6 6,109,962 + +1.1 6,109,963 - -0.5 6,110,085 + PS417_28295 0.35 +0.0 6,110,085 + PS417_28295 0.35 -0.2 6,110,085 + PS417_28295 0.35 +0.2 6,110,115 + PS417_28295 0.43 +1.3 6,110,115 + PS417_28295 0.43 +1.1 6,110,309 + +0.3 6,110,309 + -0.3 6,110,310 - +0.8 6,110,322 + -0.2 6,110,361 + +0.1 6,110,361 + +0.3 6,110,361 + -0.8 6,110,361 + -0.1 6,110,361 + +0.3 6,110,362 - +0.3 6,110,362 - -1.5
Or see this region's nucleotide sequence