Strain Fitness in Pseudomonas simiae WCS417 around PS417_16460

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-tyrosine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16455 and PS417_16460 are separated by 88 nucleotidesPS417_16460 and PS417_16465 are separated by 105 nucleotides PS417_16455: PS417_16455 - hypothetical protein, at 3,594,117 to 3,595,118 _16455 PS417_16460: PS417_16460 - hypothetical protein, at 3,595,207 to 3,596,202 _16460 PS417_16465: PS417_16465 - sirohydrochlorin ferrochelatase, at 3,596,308 to 3,597,702 _16465 Position (kb) 3595 3596 3597Strain fitness (log2 ratio) -2 -1 0 1 2at 3594.409 kb on - strand, within PS417_16455at 3594.522 kb on + strand, within PS417_16455at 3594.523 kb on - strand, within PS417_16455at 3594.746 kb on + strand, within PS417_16455at 3594.746 kb on + strand, within PS417_16455at 3594.746 kb on + strand, within PS417_16455at 3594.809 kb on - strand, within PS417_16455at 3594.809 kb on - strand, within PS417_16455at 3595.116 kb on + strandat 3595.149 kb on + strandat 3595.149 kb on + strandat 3595.168 kb on + strandat 3595.188 kb on - strandat 3595.190 kb on + strandat 3595.375 kb on + strand, within PS417_16460at 3595.376 kb on - strand, within PS417_16460at 3595.376 kb on - strand, within PS417_16460at 3595.455 kb on - strand, within PS417_16460at 3595.698 kb on + strand, within PS417_16460at 3595.760 kb on - strand, within PS417_16460at 3595.781 kb on + strand, within PS417_16460at 3595.817 kb on - strand, within PS417_16460at 3595.900 kb on + strand, within PS417_16460at 3595.900 kb on + strand, within PS417_16460at 3595.919 kb on + strand, within PS417_16460at 3595.919 kb on + strand, within PS417_16460at 3595.920 kb on - strand, within PS417_16460at 3595.957 kb on + strand, within PS417_16460at 3595.957 kb on + strand, within PS417_16460at 3595.957 kb on + strand, within PS417_16460at 3595.957 kb on + strand, within PS417_16460at 3595.958 kb on - strand, within PS417_16460at 3595.960 kb on + strand, within PS417_16460at 3595.960 kb on + strand, within PS417_16460at 3595.961 kb on - strand, within PS417_16460at 3595.961 kb on - strand, within PS417_16460at 3596.032 kb on + strand, within PS417_16460at 3596.032 kb on + strand, within PS417_16460at 3596.032 kb on + strand, within PS417_16460at 3596.032 kb on + strand, within PS417_16460at 3596.033 kb on - strand, within PS417_16460at 3596.033 kb on - strand, within PS417_16460at 3596.033 kb on - strand, within PS417_16460at 3596.033 kb on - strand, within PS417_16460at 3596.033 kb on - strand, within PS417_16460at 3596.033 kb on - strand, within PS417_16460at 3596.033 kb on - strand, within PS417_16460at 3596.033 kb on - strand, within PS417_16460at 3596.086 kb on + strand, within PS417_16460at 3596.087 kb on - strand, within PS417_16460at 3596.087 kb on - strand, within PS417_16460at 3596.089 kb on + strand, within PS417_16460at 3596.090 kb on - strand, within PS417_16460at 3596.090 kb on - strand, within PS417_16460at 3596.090 kb on - strand, within PS417_16460at 3596.090 kb on - strand, within PS417_16460at 3596.273 kb on + strandat 3596.447 kb on - strandat 3596.558 kb on + strand, within PS417_16465at 3596.558 kb on + strand, within PS417_16465at 3596.558 kb on + strand, within PS417_16465at 3596.587 kb on + strand, within PS417_16465at 3596.587 kb on + strand, within PS417_16465at 3596.588 kb on - strand, within PS417_16465at 3596.588 kb on - strand, within PS417_16465at 3596.637 kb on + strand, within PS417_16465at 3596.688 kb on - strand, within PS417_16465at 3596.688 kb on - strand, within PS417_16465at 3597.047 kb on + strand, within PS417_16465at 3597.048 kb on - strand, within PS417_16465

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-tyrosine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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3,594,409 - PS417_16455 0.29 -0.5
3,594,522 + PS417_16455 0.40 +0.9
3,594,523 - PS417_16455 0.41 +0.1
3,594,746 + PS417_16455 0.63 -0.3
3,594,746 + PS417_16455 0.63 +0.1
3,594,746 + PS417_16455 0.63 +0.3
3,594,809 - PS417_16455 0.69 -0.4
3,594,809 - PS417_16455 0.69 -1.2
3,595,116 + -0.2
3,595,149 + -0.4
3,595,149 + -1.0
3,595,168 + +0.1
3,595,188 - +0.6
3,595,190 + -0.2
3,595,375 + PS417_16460 0.17 +0.7
3,595,376 - PS417_16460 0.17 +0.1
3,595,376 - PS417_16460 0.17 +0.5
3,595,455 - PS417_16460 0.25 -0.4
3,595,698 + PS417_16460 0.49 +0.1
3,595,760 - PS417_16460 0.56 -0.0
3,595,781 + PS417_16460 0.58 -1.0
3,595,817 - PS417_16460 0.61 +0.5
3,595,900 + PS417_16460 0.70 +0.9
3,595,900 + PS417_16460 0.70 +0.1
3,595,919 + PS417_16460 0.71 +1.3
3,595,919 + PS417_16460 0.71 -1.9
3,595,920 - PS417_16460 0.72 -0.1
3,595,957 + PS417_16460 0.75 +2.0
3,595,957 + PS417_16460 0.75 -0.4
3,595,957 + PS417_16460 0.75 +0.3
3,595,957 + PS417_16460 0.75 -1.3
3,595,958 - PS417_16460 0.75 +0.3
3,595,960 + PS417_16460 0.76 +1.1
3,595,960 + PS417_16460 0.76 -0.4
3,595,961 - PS417_16460 0.76 +0.5
3,595,961 - PS417_16460 0.76 -0.4
3,596,032 + PS417_16460 0.83 -1.3
3,596,032 + PS417_16460 0.83 +0.3
3,596,032 + PS417_16460 0.83 -0.9
3,596,032 + PS417_16460 0.83 -0.0
3,596,033 - PS417_16460 0.83 -1.5
3,596,033 - PS417_16460 0.83 +1.4
3,596,033 - PS417_16460 0.83 +0.0
3,596,033 - PS417_16460 0.83 +0.1
3,596,033 - PS417_16460 0.83 +0.1
3,596,033 - PS417_16460 0.83 -0.1
3,596,033 - PS417_16460 0.83 -0.3
3,596,033 - PS417_16460 0.83 +0.4
3,596,086 + PS417_16460 0.88 -0.4
3,596,087 - PS417_16460 0.88 -0.0
3,596,087 - PS417_16460 0.88 -0.1
3,596,089 + PS417_16460 0.89 -0.0
3,596,090 - PS417_16460 0.89 +0.2
3,596,090 - PS417_16460 0.89 -0.6
3,596,090 - PS417_16460 0.89 +0.1
3,596,090 - PS417_16460 0.89 -0.4
3,596,273 + +0.5
3,596,447 - -0.2
3,596,558 + PS417_16465 0.18 -1.1
3,596,558 + PS417_16465 0.18 -1.1
3,596,558 + PS417_16465 0.18 -0.0
3,596,587 + PS417_16465 0.20 +0.8
3,596,587 + PS417_16465 0.20 -0.2
3,596,588 - PS417_16465 0.20 -0.1
3,596,588 - PS417_16465 0.20 -1.5
3,596,637 + PS417_16465 0.24 -0.7
3,596,688 - PS417_16465 0.27 +0.4
3,596,688 - PS417_16465 0.27 -1.3
3,597,047 + PS417_16465 0.53 -0.8
3,597,048 - PS417_16465 0.53 -0.3

Or see this region's nucleotide sequence