Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-tyrosine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11070 and PS417_11075 are separated by 19 nucleotides PS417_11075 and PS417_11080 overlap by 4 nucleotides
PS417_11070: PS417_11070 - rhizopine-binding protein, at 2,372,865 to 2,373,791
_11070
PS417_11075: PS417_11075 - hydroxypyruvate isomerase, at 2,373,811 to 2,374,590
_11075
PS417_11080: PS417_11080 - dehydrogenase, at 2,374,587 to 2,375,591
_11080
Position (kb)
2373
2374
2375 Strain fitness (log2 ratio)
-1
0
1
2 at 2372.867 kb on - strand at 2372.873 kb on - strand at 2373.194 kb on + strand, within PS417_11070 at 2373.540 kb on + strand, within PS417_11070 at 2373.541 kb on - strand at 2373.541 kb on - strand at 2373.676 kb on + strand, within PS417_11070 at 2373.677 kb on - strand, within PS417_11070 at 2373.677 kb on - strand at 2373.781 kb on + strand at 2373.807 kb on - strand at 2373.807 kb on - strand at 2373.812 kb on + strand at 2373.814 kb on + strand at 2374.055 kb on + strand, within PS417_11075 at 2374.414 kb on - strand, within PS417_11075 at 2374.415 kb on + strand, within PS417_11075 at 2374.415 kb on + strand, within PS417_11075 at 2374.415 kb on + strand, within PS417_11075 at 2374.416 kb on - strand, within PS417_11075 at 2374.522 kb on + strand at 2374.590 kb on + strand at 2374.590 kb on + strand at 2374.591 kb on - strand at 2374.729 kb on + strand, within PS417_11080
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-tyrosine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 2,372,867 - -0.6 2,372,873 - -0.0 2,373,194 + PS417_11070 0.35 -0.1 2,373,540 + PS417_11070 0.73 -0.3 2,373,541 - +0.6 2,373,541 - -1.3 2,373,676 + PS417_11070 0.87 -1.6 2,373,677 - PS417_11070 0.88 +1.2 2,373,677 - +0.4 2,373,781 + +0.2 2,373,807 - -0.1 2,373,807 - +0.6 2,373,812 + +0.1 2,373,814 + +0.5 2,374,055 + PS417_11075 0.31 +0.8 2,374,414 - PS417_11075 0.77 -0.8 2,374,415 + PS417_11075 0.77 -1.5 2,374,415 + PS417_11075 0.77 +2.2 2,374,415 + PS417_11075 0.77 -0.5 2,374,416 - PS417_11075 0.78 -0.1 2,374,522 + -0.3 2,374,590 + -0.4 2,374,590 + +0.3 2,374,591 - +0.8 2,374,729 + PS417_11080 0.14 -0.1
Or see this region's nucleotide sequence