Experiment: Growth at pH7 and (C) Trisodium citrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4822 and PP_4823 are separated by 146 nucleotides PP_4823 and PP_4824 are separated by 135 nucleotides
PP_4822: PP_4822 - phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 5,483,487 to 5,485,094
_4822
PP_4823: PP_4823 - Phosphoribosylamine--glycine ligase, at 5,485,241 to 5,486,536
_4823
PP_4824: PP_4824 - Sensor histidine kinase/response regulator, at 5,486,672 to 5,489,443
_4824
Position (kb) 5485
5486
5487 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5485.149 kb on + strand at 5486.534 kb on + strand at 5486.534 kb on + strand at 5486.534 kb on + strand at 5486.535 kb on - strand at 5486.535 kb on - strand at 5486.535 kb on - strand at 5486.535 kb on - strand at 5486.535 kb on - strand at 5486.538 kb on + strand at 5486.538 kb on + strand at 5486.538 kb on + strand at 5486.538 kb on + strand at 5486.538 kb on + strand at 5486.539 kb on - strand at 5486.539 kb on - strand at 5486.539 kb on - strand at 5486.539 kb on - strand at 5486.542 kb on - strand at 5486.542 kb on - strand at 5486.632 kb on + strand at 5486.632 kb on + strand at 5486.633 kb on - strand at 5486.897 kb on + strand at 5486.938 kb on - strand at 5486.969 kb on + strand, within PP_4824 at 5486.969 kb on + strand, within PP_4824 at 5486.970 kb on - strand at 5487.060 kb on + strand, within PP_4824 at 5487.060 kb on + strand, within PP_4824 at 5487.060 kb on + strand, within PP_4824 at 5487.060 kb on + strand, within PP_4824 at 5487.060 kb on + strand, within PP_4824 at 5487.060 kb on + strand, within PP_4824 at 5487.061 kb on - strand, within PP_4824 at 5487.061 kb on - strand, within PP_4824 at 5487.061 kb on - strand, within PP_4824 at 5487.061 kb on - strand, within PP_4824 at 5487.061 kb on - strand, within PP_4824 at 5487.061 kb on - strand, within PP_4824 at 5487.061 kb on - strand, within PP_4824 at 5487.098 kb on + strand, within PP_4824 at 5487.098 kb on + strand, within PP_4824 at 5487.099 kb on - strand, within PP_4824 at 5487.099 kb on - strand, within PP_4824 at 5487.251 kb on + strand, within PP_4824 at 5487.252 kb on - strand, within PP_4824 at 5487.252 kb on - strand, within PP_4824 at 5487.287 kb on + strand, within PP_4824 at 5487.287 kb on + strand, within PP_4824 at 5487.288 kb on - strand, within PP_4824 at 5487.416 kb on + strand, within PP_4824 at 5487.416 kb on + strand, within PP_4824 at 5487.417 kb on - strand at 5487.417 kb on - strand, within PP_4824
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH7 and (C) Trisodium citrate remove 5,485,149 + -1.3 5,486,534 + -2.4 5,486,534 + -0.3 5,486,534 + +0.4 5,486,535 - +0.3 5,486,535 - +1.4 5,486,535 - +0.4 5,486,535 - -1.1 5,486,535 - -2.1 5,486,538 + -0.1 5,486,538 + -0.2 5,486,538 + +0.4 5,486,538 + +0.7 5,486,538 + -1.3 5,486,539 - +1.2 5,486,539 - -0.7 5,486,539 - +0.2 5,486,539 - -1.7 5,486,542 - -0.9 5,486,542 - -0.3 5,486,632 + -0.6 5,486,632 + +0.3 5,486,633 - -0.4 5,486,897 + -0.8 5,486,938 - -0.1 5,486,969 + PP_4824 0.11 -1.2 5,486,969 + PP_4824 0.11 -1.8 5,486,970 - +2.0 5,487,060 + PP_4824 0.14 -1.0 5,487,060 + PP_4824 0.14 -2.4 5,487,060 + PP_4824 0.14 +0.4 5,487,060 + PP_4824 0.14 +1.0 5,487,060 + PP_4824 0.14 -2.2 5,487,060 + PP_4824 0.14 -3.0 5,487,061 - PP_4824 0.14 -0.6 5,487,061 - PP_4824 0.14 -1.4 5,487,061 - PP_4824 0.14 +0.0 5,487,061 - PP_4824 0.14 -0.6 5,487,061 - PP_4824 0.14 -1.7 5,487,061 - PP_4824 0.14 -2.1 5,487,061 - PP_4824 0.14 -2.1 5,487,098 + PP_4824 0.15 -1.6 5,487,098 + PP_4824 0.15 -1.8 5,487,099 - PP_4824 0.15 -0.9 5,487,099 - PP_4824 0.15 -1.9 5,487,251 + PP_4824 0.21 -1.4 5,487,252 - PP_4824 0.21 -1.3 5,487,252 - PP_4824 0.21 -1.3 5,487,287 + PP_4824 0.22 -0.8 5,487,287 + PP_4824 0.22 -1.7 5,487,288 - PP_4824 0.22 -2.9 5,487,416 + PP_4824 0.27 -2.1 5,487,416 + PP_4824 0.27 -1.7 5,487,417 - -0.3 5,487,417 - PP_4824 0.27 -1.2
Or see this region's nucleotide sequence