Experiment: Growth at pH7 and (C) Trisodium citrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4704 and PP_4705 are separated by 81 nucleotides PP_4705 and PP_4706 are separated by 60 nucleotides PP_4706 and PP_4707 are separated by 75 nucleotides PP_4707 and PP_4708 are separated by 263 nucleotides
PP_4704: PP_4704 - conserved protein of unknown function, at 5,347,527 to 5,350,463
_4704
PP_4705: PP_4705 - Glyoxalase, at 5,350,545 to 5,350,958
_4705
PP_4706: PP_4706 - conserved protein of unknown function, at 5,351,019 to 5,351,321
_4706
PP_4707: PP_4707 - OsmY-related protein, at 5,351,397 to 5,351,747
_4707
PP_4708: PP_4708 - Polyribonucleotide nucleotidyltransferase, at 5,352,011 to 5,354,116
_4708
Position (kb) 5351
5352 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5350.092 kb on + strand, within PP_4704 at 5350.093 kb on - strand, within PP_4704 at 5350.188 kb on + strand at 5350.189 kb on - strand at 5350.189 kb on - strand at 5350.347 kb on + strand at 5350.347 kb on + strand at 5350.348 kb on - strand at 5350.386 kb on + strand at 5350.387 kb on - strand at 5350.387 kb on - strand at 5350.398 kb on - strand at 5350.462 kb on - strand at 5350.501 kb on + strand at 5350.502 kb on - strand at 5350.579 kb on + strand at 5350.579 kb on + strand at 5350.687 kb on + strand, within PP_4705 at 5350.688 kb on - strand, within PP_4705 at 5350.693 kb on + strand, within PP_4705 at 5350.694 kb on - strand, within PP_4705 at 5350.735 kb on + strand, within PP_4705 at 5350.813 kb on + strand, within PP_4705 at 5350.814 kb on - strand, within PP_4705 at 5350.867 kb on + strand, within PP_4705 at 5351.024 kb on + strand at 5351.025 kb on - strand at 5351.035 kb on + strand at 5351.172 kb on + strand, within PP_4706 at 5351.172 kb on + strand, within PP_4706 at 5351.173 kb on - strand, within PP_4706 at 5351.173 kb on - strand, within PP_4706 at 5351.173 kb on - strand, within PP_4706 at 5351.179 kb on - strand, within PP_4706 at 5351.205 kb on + strand, within PP_4706 at 5351.205 kb on + strand, within PP_4706 at 5351.206 kb on - strand, within PP_4706 at 5351.206 kb on - strand, within PP_4706 at 5351.316 kb on + strand at 5351.317 kb on - strand at 5351.317 kb on - strand at 5351.317 kb on - strand at 5351.317 kb on - strand at 5351.398 kb on + strand at 5351.424 kb on + strand at 5351.425 kb on - strand at 5351.425 kb on - strand at 5351.425 kb on - strand at 5351.454 kb on - strand, within PP_4707 at 5351.454 kb on - strand, within PP_4707 at 5351.591 kb on + strand, within PP_4707 at 5351.721 kb on - strand at 5351.783 kb on + strand at 5351.800 kb on + strand at 5351.800 kb on + strand at 5351.801 kb on - strand at 5351.808 kb on + strand at 5352.012 kb on + strand at 5352.240 kb on + strand at 5352.240 kb on + strand, within PP_4708 at 5352.240 kb on + strand, within PP_4708 at 5352.241 kb on - strand, within PP_4708
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH7 and (C) Trisodium citrate remove 5,350,092 + PP_4704 0.87 +1.0 5,350,093 - PP_4704 0.87 -1.1 5,350,188 + -0.0 5,350,189 - +0.6 5,350,189 - -4.0 5,350,347 + +1.3 5,350,347 + +1.1 5,350,348 - +1.0 5,350,386 + -0.3 5,350,387 - -0.1 5,350,387 - -1.6 5,350,398 - -0.7 5,350,462 - -2.8 5,350,501 + +1.1 5,350,502 - -0.4 5,350,579 + +1.2 5,350,579 + +0.1 5,350,687 + PP_4705 0.34 -0.0 5,350,688 - PP_4705 0.35 +0.4 5,350,693 + PP_4705 0.36 +0.2 5,350,694 - PP_4705 0.36 +0.9 5,350,735 + PP_4705 0.46 -0.3 5,350,813 + PP_4705 0.65 +0.2 5,350,814 - PP_4705 0.65 -0.4 5,350,867 + PP_4705 0.78 -0.2 5,351,024 + -0.8 5,351,025 - +0.0 5,351,035 + -0.0 5,351,172 + PP_4706 0.50 +1.0 5,351,172 + PP_4706 0.50 +1.0 5,351,173 - PP_4706 0.51 +0.8 5,351,173 - PP_4706 0.51 +0.3 5,351,173 - PP_4706 0.51 -1.2 5,351,179 - PP_4706 0.53 +0.8 5,351,205 + PP_4706 0.61 +2.0 5,351,205 + PP_4706 0.61 +1.3 5,351,206 - PP_4706 0.62 +0.4 5,351,206 - PP_4706 0.62 +0.0 5,351,316 + -1.2 5,351,317 - -0.8 5,351,317 - +1.6 5,351,317 - -1.8 5,351,317 - +0.8 5,351,398 + +1.0 5,351,424 + -0.1 5,351,425 - +0.2 5,351,425 - -2.5 5,351,425 - -0.2 5,351,454 - PP_4707 0.16 -0.0 5,351,454 - PP_4707 0.16 +1.1 5,351,591 + PP_4707 0.55 +0.2 5,351,721 - +0.8 5,351,783 + -0.5 5,351,800 + +1.1 5,351,800 + +1.5 5,351,801 - -3.0 5,351,808 + +0.6 5,352,012 + +0.8 5,352,240 + -0.0 5,352,240 + PP_4708 0.11 -0.4 5,352,240 + PP_4708 0.11 -0.2 5,352,241 - PP_4708 0.11 -1.0
Or see this region's nucleotide sequence