Strain Fitness in Pseudomonas putida KT2440 around PP_4663

Experiment: Growth at pH7 and (C) Trisodium citrate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_4661 and PP_4662 are separated by 82 nucleotidesPP_4662 and PP_4663 overlap by 11 nucleotidesPP_4663 and PP_4664 are separated by 77 nucleotides PP_4661: PP_4661 - modulator of drug activity B, at 5,288,503 to 5,289,174 _4661 PP_4662: PP_4662 - conserved protein of unknown function, at 5,289,257 to 5,289,571 _4662 PP_4663: PP_4663 - conserved transmembrane protein of unknown function, at 5,289,561 to 5,290,325 _4663 PP_4664: PP_4664 - Transcriptional regulator, LysR family, at 5,290,403 to 5,291,284 _4664 Position (kb) 5289 5290 5291Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5288.651 kb on + strand, within PP_4661at 5288.651 kb on + strand, within PP_4661at 5288.652 kb on - strand, within PP_4661at 5288.738 kb on + strand, within PP_4661at 5288.738 kb on + strand, within PP_4661at 5288.738 kb on + strand, within PP_4661at 5288.738 kb on + strand, within PP_4661at 5288.738 kb on + strand, within PP_4661at 5288.739 kb on - strand, within PP_4661at 5288.739 kb on - strand, within PP_4661at 5288.739 kb on - strand, within PP_4661at 5288.739 kb on - strandat 5288.739 kb on - strand, within PP_4661at 5288.739 kb on - strand, within PP_4661at 5288.772 kb on - strand, within PP_4661at 5288.796 kb on + strand, within PP_4661at 5288.813 kb on + strand, within PP_4661at 5288.814 kb on - strand, within PP_4661at 5288.814 kb on - strand, within PP_4661at 5288.814 kb on - strand, within PP_4661at 5288.853 kb on - strand, within PP_4661at 5288.853 kb on - strand, within PP_4661at 5288.853 kb on - strand, within PP_4661at 5288.900 kb on + strand, within PP_4661at 5288.900 kb on + strand, within PP_4661at 5288.901 kb on - strand, within PP_4661at 5288.901 kb on - strand, within PP_4661at 5288.951 kb on + strand, within PP_4661at 5288.952 kb on - strand, within PP_4661at 5289.063 kb on + strand, within PP_4661at 5289.136 kb on - strandat 5289.136 kb on - strandat 5289.156 kb on + strandat 5289.178 kb on - strandat 5289.208 kb on - strandat 5289.208 kb on - strandat 5289.248 kb on + strandat 5289.277 kb on + strandat 5289.278 kb on - strandat 5289.278 kb on - strandat 5289.278 kb on - strandat 5289.338 kb on + strand, within PP_4662at 5289.339 kb on - strand, within PP_4662at 5289.506 kb on + strand, within PP_4662at 5289.507 kb on - strand, within PP_4662at 5289.507 kb on - strand, within PP_4662at 5289.507 kb on - strand, within PP_4662at 5289.748 kb on - strand, within PP_4663at 5289.774 kb on - strand, within PP_4663at 5289.833 kb on - strand, within PP_4663at 5289.930 kb on + strand, within PP_4663at 5289.930 kb on + strand, within PP_4663at 5289.931 kb on - strand, within PP_4663at 5289.958 kb on + strand, within PP_4663at 5289.958 kb on + strand, within PP_4663at 5289.959 kb on - strand, within PP_4663at 5289.959 kb on - strand, within PP_4663at 5289.959 kb on - strand, within PP_4663at 5289.968 kb on - strand, within PP_4663at 5290.266 kb on + strandat 5290.266 kb on + strandat 5290.266 kb on + strandat 5290.266 kb on + strandat 5290.266 kb on + strandat 5290.303 kb on + strandat 5290.304 kb on - strandat 5290.304 kb on - strandat 5290.368 kb on + strandat 5290.368 kb on + strandat 5290.369 kb on - strandat 5290.370 kb on + strandat 5290.370 kb on + strandat 5290.371 kb on - strandat 5290.573 kb on - strand, within PP_4664at 5290.621 kb on - strand, within PP_4664at 5290.721 kb on + strand, within PP_4664at 5290.722 kb on - strand, within PP_4664at 5290.745 kb on + strand, within PP_4664at 5290.745 kb on + strand, within PP_4664at 5290.745 kb on + strand, within PP_4664at 5290.745 kb on + strand, within PP_4664at 5290.746 kb on - strand, within PP_4664at 5290.746 kb on - strand, within PP_4664at 5290.746 kb on - strand, within PP_4664at 5290.816 kb on + strand, within PP_4664at 5290.816 kb on + strand, within PP_4664at 5290.816 kb on + strand, within PP_4664at 5290.979 kb on + strand, within PP_4664at 5290.979 kb on + strand, within PP_4664at 5290.979 kb on + strand, within PP_4664at 5290.980 kb on - strand, within PP_4664at 5291.015 kb on + strand, within PP_4664at 5291.250 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH7 and (C) Trisodium citrate
remove
5,288,651 + PP_4661 0.22 +0.6
5,288,651 + PP_4661 0.22 +0.6
5,288,652 - PP_4661 0.22 +2.5
5,288,738 + PP_4661 0.35 -3.9
5,288,738 + PP_4661 0.35 -0.7
5,288,738 + PP_4661 0.35 +0.3
5,288,738 + PP_4661 0.35 +0.9
5,288,738 + PP_4661 0.35 +0.3
5,288,739 - PP_4661 0.35 -0.5
5,288,739 - PP_4661 0.35 +0.5
5,288,739 - PP_4661 0.35 -0.1
5,288,739 - -0.1
5,288,739 - PP_4661 0.35 +0.7
5,288,739 - PP_4661 0.35 +1.1
5,288,772 - PP_4661 0.40 +0.4
5,288,796 + PP_4661 0.44 -2.1
5,288,813 + PP_4661 0.46 +0.5
5,288,814 - PP_4661 0.46 +0.4
5,288,814 - PP_4661 0.46 -0.4
5,288,814 - PP_4661 0.46 +0.0
5,288,853 - PP_4661 0.52 -1.3
5,288,853 - PP_4661 0.52 +0.8
5,288,853 - PP_4661 0.52 -0.3
5,288,900 + PP_4661 0.59 +0.5
5,288,900 + PP_4661 0.59 +1.4
5,288,901 - PP_4661 0.59 -1.0
5,288,901 - PP_4661 0.59 +0.6
5,288,951 + PP_4661 0.67 +0.4
5,288,952 - PP_4661 0.67 +0.5
5,289,063 + PP_4661 0.83 +0.9
5,289,136 - -0.0
5,289,136 - -0.7
5,289,156 + +1.9
5,289,178 - -1.4
5,289,208 - -1.2
5,289,208 - -2.1
5,289,248 + +0.2
5,289,277 + -1.4
5,289,278 - +1.3
5,289,278 - +0.2
5,289,278 - -0.3
5,289,338 + PP_4662 0.26 -2.6
5,289,339 - PP_4662 0.26 -0.6
5,289,506 + PP_4662 0.79 +0.5
5,289,507 - PP_4662 0.79 -0.6
5,289,507 - PP_4662 0.79 -0.6
5,289,507 - PP_4662 0.79 +1.0
5,289,748 - PP_4663 0.24 +0.4
5,289,774 - PP_4663 0.28 +1.2
5,289,833 - PP_4663 0.36 +1.6
5,289,930 + PP_4663 0.48 -1.2
5,289,930 + PP_4663 0.48 -0.4
5,289,931 - PP_4663 0.48 +0.5
5,289,958 + PP_4663 0.52 +1.1
5,289,958 + PP_4663 0.52 +1.7
5,289,959 - PP_4663 0.52 +1.0
5,289,959 - PP_4663 0.52 +0.7
5,289,959 - PP_4663 0.52 +0.2
5,289,968 - PP_4663 0.53 -0.1
5,290,266 + +1.1
5,290,266 + -0.0
5,290,266 + +0.3
5,290,266 + -0.1
5,290,266 + -1.5
5,290,303 + +1.0
5,290,304 - -0.8
5,290,304 - -1.8
5,290,368 + -0.1
5,290,368 + +0.4
5,290,369 - -0.6
5,290,370 + +1.1
5,290,370 + +0.0
5,290,371 - -0.2
5,290,573 - PP_4664 0.19 +3.7
5,290,621 - PP_4664 0.25 +0.6
5,290,721 + PP_4664 0.36 -0.6
5,290,722 - PP_4664 0.36 -1.1
5,290,745 + PP_4664 0.39 +1.9
5,290,745 + PP_4664 0.39 +0.7
5,290,745 + PP_4664 0.39 -0.1
5,290,745 + PP_4664 0.39 -0.5
5,290,746 - PP_4664 0.39 -1.2
5,290,746 - PP_4664 0.39 -3.3
5,290,746 - PP_4664 0.39 -0.8
5,290,816 + PP_4664 0.47 -0.2
5,290,816 + PP_4664 0.47 +0.4
5,290,816 + PP_4664 0.47 -2.2
5,290,979 + PP_4664 0.65 +0.6
5,290,979 + PP_4664 0.65 +0.8
5,290,979 + PP_4664 0.65 -2.3
5,290,980 - PP_4664 0.65 +0.4
5,291,015 + PP_4664 0.69 -0.7
5,291,250 - -0.7

Or see this region's nucleotide sequence