Experiment: Growth at pH7 and (C) Trisodium citrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4596 and PP_4597 are separated by 222 nucleotides PP_4597 and PP_4598 are separated by 20 nucleotides
PP_4596: PP_4596 - putative oxidoreductase, at 5,214,375 to 5,216,705
_4596
PP_4597: PP_4597 - Cyclic pyranopterin monophosphate synthase, at 5,216,928 to 5,217,932
_4597
PP_4598: PP_4598 - conserved membrane protein of unknown function, at 5,217,953 to 5,218,852
_4598
Position (kb) 5216
5217
5218 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5216.191 kb on + strand, within PP_4596 at 5216.192 kb on - strand, within PP_4596 at 5216.212 kb on + strand, within PP_4596 at 5216.251 kb on + strand, within PP_4596 at 5216.252 kb on - strand, within PP_4596 at 5216.252 kb on - strand, within PP_4596 at 5216.252 kb on - strand, within PP_4596 at 5216.336 kb on - strand, within PP_4596 at 5216.336 kb on - strand, within PP_4596 at 5216.336 kb on - strand, within PP_4596 at 5216.386 kb on + strand, within PP_4596 at 5216.386 kb on + strand, within PP_4596 at 5216.386 kb on + strand, within PP_4596 at 5216.398 kb on + strand, within PP_4596 at 5216.398 kb on + strand, within PP_4596 at 5216.431 kb on + strand, within PP_4596 at 5216.431 kb on + strand, within PP_4596 at 5216.431 kb on + strand, within PP_4596 at 5216.432 kb on - strand, within PP_4596 at 5216.432 kb on - strand, within PP_4596 at 5216.432 kb on - strand, within PP_4596 at 5216.432 kb on - strand, within PP_4596 at 5216.678 kb on - strand at 5216.678 kb on - strand at 5216.678 kb on - strand at 5216.678 kb on - strand at 5216.678 kb on - strand at 5216.743 kb on + strand at 5216.743 kb on + strand at 5216.743 kb on + strand at 5216.743 kb on + strand at 5216.744 kb on - strand at 5216.780 kb on + strand at 5216.820 kb on + strand at 5216.821 kb on - strand at 5216.833 kb on - strand at 5216.890 kb on + strand at 5216.890 kb on + strand at 5216.891 kb on - strand at 5217.024 kb on + strand at 5217.024 kb on + strand at 5217.024 kb on + strand at 5217.025 kb on - strand at 5217.025 kb on - strand at 5217.025 kb on - strand at 5217.157 kb on + strand, within PP_4597 at 5217.157 kb on + strand, within PP_4597 at 5217.157 kb on + strand, within PP_4597 at 5217.352 kb on + strand, within PP_4597 at 5217.353 kb on - strand, within PP_4597 at 5217.353 kb on - strand, within PP_4597 at 5217.362 kb on - strand, within PP_4597 at 5217.571 kb on + strand, within PP_4597 at 5217.639 kb on + strand, within PP_4597 at 5218.094 kb on + strand, within PP_4598 at 5218.094 kb on + strand, within PP_4598 at 5218.099 kb on - strand, within PP_4598 at 5218.481 kb on + strand, within PP_4598 at 5218.482 kb on - strand, within PP_4598 at 5218.588 kb on + strand, within PP_4598 at 5218.588 kb on + strand, within PP_4598 at 5218.588 kb on + strand, within PP_4598 at 5218.589 kb on - strand, within PP_4598 at 5218.589 kb on - strand, within PP_4598 at 5218.589 kb on - strand, within PP_4598 at 5218.589 kb on - strand, within PP_4598 at 5218.591 kb on + strand, within PP_4598 at 5218.592 kb on - strand, within PP_4598 at 5218.592 kb on - strand, within PP_4598 at 5218.592 kb on - strand, within PP_4598 at 5218.595 kb on + strand, within PP_4598 at 5218.595 kb on + strand, within PP_4598 at 5218.838 kb on + strand at 5218.839 kb on - strand at 5218.839 kb on - strand at 5218.839 kb on - strand at 5218.901 kb on - strand at 5218.901 kb on - strand at 5218.906 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH7 and (C) Trisodium citrate remove 5,216,191 + PP_4596 0.78 +1.4 5,216,192 - PP_4596 0.78 -0.1 5,216,212 + PP_4596 0.79 +1.3 5,216,251 + PP_4596 0.80 -0.2 5,216,252 - PP_4596 0.81 +0.5 5,216,252 - PP_4596 0.81 +0.8 5,216,252 - PP_4596 0.81 -0.1 5,216,336 - PP_4596 0.84 -0.5 5,216,336 - PP_4596 0.84 +0.3 5,216,336 - PP_4596 0.84 -0.0 5,216,386 + PP_4596 0.86 +1.1 5,216,386 + PP_4596 0.86 -1.0 5,216,386 + PP_4596 0.86 -0.5 5,216,398 + PP_4596 0.87 +1.1 5,216,398 + PP_4596 0.87 +0.6 5,216,431 + PP_4596 0.88 +0.5 5,216,431 + PP_4596 0.88 +0.9 5,216,431 + PP_4596 0.88 +0.2 5,216,432 - PP_4596 0.88 +0.6 5,216,432 - PP_4596 0.88 -0.3 5,216,432 - PP_4596 0.88 +0.9 5,216,432 - PP_4596 0.88 -1.3 5,216,678 - -0.1 5,216,678 - +0.4 5,216,678 - +0.2 5,216,678 - -1.0 5,216,678 - +1.1 5,216,743 + -0.4 5,216,743 + -1.3 5,216,743 + +0.9 5,216,743 + +0.6 5,216,744 - +1.1 5,216,780 + -1.2 5,216,820 + -0.5 5,216,821 - +0.6 5,216,833 - -0.7 5,216,890 + +0.5 5,216,890 + +0.0 5,216,891 - +0.8 5,217,024 + -0.5 5,217,024 + -0.6 5,217,024 + -0.5 5,217,025 - -3.0 5,217,025 - -0.5 5,217,025 - -0.3 5,217,157 + PP_4597 0.23 +0.8 5,217,157 + PP_4597 0.23 +1.3 5,217,157 + PP_4597 0.23 +1.3 5,217,352 + PP_4597 0.42 -0.1 5,217,353 - PP_4597 0.42 +1.9 5,217,353 - PP_4597 0.42 -0.4 5,217,362 - PP_4597 0.43 -0.6 5,217,571 + PP_4597 0.64 +0.4 5,217,639 + PP_4597 0.71 +0.9 5,218,094 + PP_4598 0.16 +0.3 5,218,094 + PP_4598 0.16 +0.8 5,218,099 - PP_4598 0.16 -2.6 5,218,481 + PP_4598 0.59 -1.4 5,218,482 - PP_4598 0.59 +0.3 5,218,588 + PP_4598 0.71 +1.1 5,218,588 + PP_4598 0.71 +0.0 5,218,588 + PP_4598 0.71 +0.3 5,218,589 - PP_4598 0.71 -2.4 5,218,589 - PP_4598 0.71 -1.9 5,218,589 - PP_4598 0.71 +1.3 5,218,589 - PP_4598 0.71 -1.5 5,218,591 + PP_4598 0.71 +0.4 5,218,592 - PP_4598 0.71 +0.9 5,218,592 - PP_4598 0.71 +0.7 5,218,592 - PP_4598 0.71 -1.1 5,218,595 + PP_4598 0.71 +1.7 5,218,595 + PP_4598 0.71 -0.2 5,218,838 + +0.8 5,218,839 - -0.4 5,218,839 - +0.9 5,218,839 - -1.4 5,218,901 - +1.9 5,218,901 - +2.1 5,218,906 - +0.3
Or see this region's nucleotide sequence