Experiment: Growth at pH7 and (C) Trisodium citrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4482 and PP_4483 are separated by 98 nucleotides PP_4483 and PP_4484 are separated by 22 nucleotides PP_4484 and PP_4485 overlap by 4 nucleotides
PP_4482: PP_4482 - Transcriptional regulator, AraC family, at 5,092,641 to 5,093,621
_4482
PP_4483: PP_4483 - histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit, at 5,093,720 to 5,094,484
_4483
PP_4484: PP_4484 - histidine / lysine / arginine / ornithine ABC transporter - permease subunit, at 5,094,507 to 5,095,205
_4484
PP_4485: PP_4485 - histidine / lysine / arginine / ornithine ABC transporter - permease subunit, at 5,095,202 to 5,095,891
_4485
Position (kb) 5093
5094
5095 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5092.733 kb on + strand at 5092.733 kb on + strand at 5092.733 kb on + strand at 5092.738 kb on + strand at 5092.852 kb on + strand, within PP_4482 at 5092.880 kb on - strand, within PP_4482 at 5092.892 kb on + strand, within PP_4482 at 5093.034 kb on - strand, within PP_4482 at 5093.034 kb on - strand, within PP_4482 at 5093.067 kb on + strand, within PP_4482 at 5093.302 kb on + strand, within PP_4482 at 5093.509 kb on + strand, within PP_4482 at 5093.509 kb on + strand, within PP_4482 at 5093.509 kb on + strand, within PP_4482 at 5093.621 kb on + strand at 5093.621 kb on + strand at 5093.621 kb on + strand at 5093.622 kb on - strand at 5093.622 kb on - strand at 5093.622 kb on - strand at 5093.622 kb on - strand at 5093.626 kb on + strand at 5093.696 kb on + strand at 5093.721 kb on + strand at 5093.722 kb on - strand at 5093.876 kb on + strand, within PP_4483 at 5093.877 kb on - strand, within PP_4483 at 5094.037 kb on + strand, within PP_4483 at 5094.037 kb on + strand, within PP_4483 at 5094.037 kb on + strand, within PP_4483 at 5094.037 kb on + strand, within PP_4483 at 5094.037 kb on + strand, within PP_4483 at 5094.037 kb on + strand, within PP_4483 at 5094.037 kb on + strand, within PP_4483 at 5094.037 kb on + strand, within PP_4483 at 5094.038 kb on - strand, within PP_4483 at 5094.038 kb on - strand, within PP_4483 at 5094.038 kb on - strand, within PP_4483 at 5094.087 kb on + strand, within PP_4483 at 5094.088 kb on - strand, within PP_4483 at 5094.088 kb on - strand, within PP_4483 at 5094.480 kb on + strand at 5094.481 kb on - strand at 5094.481 kb on - strand at 5094.592 kb on + strand, within PP_4484 at 5094.592 kb on + strand, within PP_4484 at 5094.593 kb on - strand, within PP_4484 at 5094.593 kb on - strand, within PP_4484 at 5094.593 kb on - strand, within PP_4484 at 5094.593 kb on - strand, within PP_4484 at 5094.611 kb on + strand, within PP_4484 at 5094.611 kb on + strand, within PP_4484 at 5094.611 kb on + strand, within PP_4484 at 5094.611 kb on + strand, within PP_4484 at 5094.611 kb on + strand, within PP_4484 at 5094.611 kb on + strand, within PP_4484 at 5094.612 kb on - strand, within PP_4484 at 5094.613 kb on + strand, within PP_4484 at 5094.613 kb on + strand, within PP_4484 at 5094.613 kb on + strand, within PP_4484 at 5094.614 kb on - strand, within PP_4484 at 5094.631 kb on + strand, within PP_4484 at 5094.631 kb on + strand, within PP_4484 at 5094.631 kb on + strand, within PP_4484 at 5094.632 kb on - strand, within PP_4484 at 5094.632 kb on - strand, within PP_4484 at 5094.634 kb on + strand, within PP_4484 at 5094.635 kb on - strand, within PP_4484 at 5094.635 kb on - strand, within PP_4484 at 5094.734 kb on - strand, within PP_4484 at 5094.781 kb on + strand, within PP_4484 at 5094.874 kb on + strand, within PP_4484 at 5094.874 kb on + strand, within PP_4484 at 5094.874 kb on + strand, within PP_4484 at 5094.874 kb on + strand, within PP_4484 at 5094.884 kb on + strand, within PP_4484 at 5094.885 kb on - strand, within PP_4484 at 5094.917 kb on + strand, within PP_4484 at 5094.917 kb on + strand, within PP_4484 at 5094.917 kb on + strand, within PP_4484 at 5094.918 kb on - strand, within PP_4484 at 5094.918 kb on - strand, within PP_4484 at 5094.918 kb on - strand, within PP_4484 at 5094.944 kb on + strand, within PP_4484 at 5094.944 kb on + strand, within PP_4484 at 5094.982 kb on + strand, within PP_4484 at 5094.983 kb on - strand, within PP_4484 at 5094.983 kb on - strand, within PP_4484 at 5095.027 kb on + strand, within PP_4484 at 5095.027 kb on + strand, within PP_4484 at 5095.027 kb on + strand, within PP_4484 at 5095.027 kb on + strand, within PP_4484 at 5095.027 kb on + strand, within PP_4484 at 5095.028 kb on - strand, within PP_4484 at 5095.028 kb on - strand, within PP_4484 at 5095.028 kb on - strand, within PP_4484 at 5095.028 kb on - strand, within PP_4484 at 5095.033 kb on + strand, within PP_4484 at 5095.033 kb on + strand, within PP_4484 at 5095.033 kb on + strand, within PP_4484 at 5095.034 kb on - strand, within PP_4484 at 5095.034 kb on - strand, within PP_4484 at 5095.034 kb on - strand, within PP_4484 at 5095.163 kb on - strand at 5095.193 kb on - strand at 5095.205 kb on + strand at 5095.205 kb on + strand at 5095.206 kb on - strand at 5095.249 kb on - strand at 5095.249 kb on - strand at 5095.249 kb on - strand at 5095.287 kb on + strand, within PP_4485 at 5095.287 kb on + strand, within PP_4485 at 5095.287 kb on + strand, within PP_4485 at 5095.288 kb on - strand, within PP_4485
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH7 and (C) Trisodium citrate remove 5,092,733 + +0.9 5,092,733 + +1.1 5,092,733 + -0.4 5,092,738 + -2.0 5,092,852 + PP_4482 0.22 +2.3 5,092,880 - PP_4482 0.24 -1.2 5,092,892 + PP_4482 0.26 -1.5 5,093,034 - PP_4482 0.40 -1.4 5,093,034 - PP_4482 0.40 -0.1 5,093,067 + PP_4482 0.43 -1.7 5,093,302 + PP_4482 0.67 -0.1 5,093,509 + PP_4482 0.88 +0.4 5,093,509 + PP_4482 0.88 +1.5 5,093,509 + PP_4482 0.88 -0.3 5,093,621 + +0.1 5,093,621 + -2.7 5,093,621 + +1.1 5,093,622 - +0.3 5,093,622 - -1.4 5,093,622 - -0.8 5,093,622 - -0.3 5,093,626 + -2.3 5,093,696 + +2.1 5,093,721 + -0.3 5,093,722 - -1.2 5,093,876 + PP_4483 0.20 +0.5 5,093,877 - PP_4483 0.21 +0.4 5,094,037 + PP_4483 0.41 -2.3 5,094,037 + PP_4483 0.41 -0.6 5,094,037 + PP_4483 0.41 +2.0 5,094,037 + PP_4483 0.41 +2.0 5,094,037 + PP_4483 0.41 -0.5 5,094,037 + PP_4483 0.41 +0.2 5,094,037 + PP_4483 0.41 +1.6 5,094,037 + PP_4483 0.41 +0.6 5,094,038 - PP_4483 0.42 -0.1 5,094,038 - PP_4483 0.42 +1.1 5,094,038 - PP_4483 0.42 +0.8 5,094,087 + PP_4483 0.48 +1.0 5,094,088 - PP_4483 0.48 -1.2 5,094,088 - PP_4483 0.48 -0.0 5,094,480 + +0.4 5,094,481 - -2.7 5,094,481 - -0.4 5,094,592 + PP_4484 0.12 +1.0 5,094,592 + PP_4484 0.12 +0.3 5,094,593 - PP_4484 0.12 +1.0 5,094,593 - PP_4484 0.12 -0.9 5,094,593 - PP_4484 0.12 +0.7 5,094,593 - PP_4484 0.12 -1.6 5,094,611 + PP_4484 0.15 -0.0 5,094,611 + PP_4484 0.15 -0.4 5,094,611 + PP_4484 0.15 -0.8 5,094,611 + PP_4484 0.15 +0.1 5,094,611 + PP_4484 0.15 -1.4 5,094,611 + PP_4484 0.15 -1.0 5,094,612 - PP_4484 0.15 -1.2 5,094,613 + PP_4484 0.15 +0.6 5,094,613 + PP_4484 0.15 -1.6 5,094,613 + PP_4484 0.15 +0.0 5,094,614 - PP_4484 0.15 -0.7 5,094,631 + PP_4484 0.18 -3.7 5,094,631 + PP_4484 0.18 +0.9 5,094,631 + PP_4484 0.18 -0.2 5,094,632 - PP_4484 0.18 +1.2 5,094,632 - PP_4484 0.18 +0.2 5,094,634 + PP_4484 0.18 -1.2 5,094,635 - PP_4484 0.18 -1.2 5,094,635 - PP_4484 0.18 -0.2 5,094,734 - PP_4484 0.32 -0.1 5,094,781 + PP_4484 0.39 +0.2 5,094,874 + PP_4484 0.53 -3.2 5,094,874 + PP_4484 0.53 +0.3 5,094,874 + PP_4484 0.53 +0.1 5,094,874 + PP_4484 0.53 -0.0 5,094,884 + PP_4484 0.54 -0.4 5,094,885 - PP_4484 0.54 +1.0 5,094,917 + PP_4484 0.59 +0.7 5,094,917 + PP_4484 0.59 +0.1 5,094,917 + PP_4484 0.59 +0.6 5,094,918 - PP_4484 0.59 +0.1 5,094,918 - PP_4484 0.59 +0.1 5,094,918 - PP_4484 0.59 -0.1 5,094,944 + PP_4484 0.63 +0.5 5,094,944 + PP_4484 0.63 +0.1 5,094,982 + PP_4484 0.68 +0.6 5,094,983 - PP_4484 0.68 +0.2 5,094,983 - PP_4484 0.68 +1.5 5,095,027 + PP_4484 0.74 +0.8 5,095,027 + PP_4484 0.74 +0.1 5,095,027 + PP_4484 0.74 +2.0 5,095,027 + PP_4484 0.74 +0.4 5,095,027 + PP_4484 0.74 +0.8 5,095,028 - PP_4484 0.75 -0.3 5,095,028 - PP_4484 0.75 -0.1 5,095,028 - PP_4484 0.75 -0.7 5,095,028 - PP_4484 0.75 -2.2 5,095,033 + PP_4484 0.75 +0.7 5,095,033 + PP_4484 0.75 -3.9 5,095,033 + PP_4484 0.75 -0.4 5,095,034 - PP_4484 0.75 +0.4 5,095,034 - PP_4484 0.75 +0.7 5,095,034 - PP_4484 0.75 -2.3 5,095,163 - +0.3 5,095,193 - -0.9 5,095,205 + +0.7 5,095,205 + +0.1 5,095,206 - -0.5 5,095,249 - -0.1 5,095,249 - -0.2 5,095,249 - +1.1 5,095,287 + PP_4485 0.12 +0.5 5,095,287 + PP_4485 0.12 +0.3 5,095,287 + PP_4485 0.12 +1.1 5,095,288 - PP_4485 0.12 +1.0
Or see this region's nucleotide sequence