Strain Fitness in Pseudomonas putida KT2440 around PP_4388

Experiment: Growth at pH7 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4386 and PP_4387 are separated by 160 nucleotidesPP_4387 and PP_4388 are separated by 67 nucleotidesPP_4388 and PP_4389 are separated by 28 nucleotidesPP_4389 and PP_4390 are separated by 12 nucleotides PP_4386: PP_4386 - flagellar basal-body rod protein FlgF, at 4,979,469 to 4,980,209 _4386 PP_4387: PP_4387 - conserved exported protein of unknown function, at 4,980,370 to 4,980,561 _4387 PP_4388: PP_4388 - Flagellar hook protein FlgE, at 4,980,629 to 4,981,951 _4388 PP_4389: PP_4389 - Flagellar basal-body rod modification protein FlgD, at 4,981,980 to 4,982,681 _4389 PP_4390: PP_4390 - flagellar basal-body rod protein FlgC, at 4,982,694 to 4,983,137 _4390 Position (kb) 4980 4981 4982Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4979.914 kb on + strand, within PP_4386at 4979.914 kb on + strand, within PP_4386at 4979.914 kb on + strand, within PP_4386at 4979.914 kb on + strand, within PP_4386at 4979.914 kb on + strand, within PP_4386at 4979.914 kb on + strand, within PP_4386at 4979.915 kb on - strand, within PP_4386at 4979.915 kb on - strand, within PP_4386at 4979.915 kb on - strand, within PP_4386at 4980.193 kb on + strandat 4980.193 kb on + strandat 4980.194 kb on - strandat 4980.227 kb on + strandat 4980.321 kb on + strandat 4980.398 kb on + strand, within PP_4387at 4980.398 kb on + strand, within PP_4387at 4980.482 kb on + strand, within PP_4387at 4980.482 kb on + strand, within PP_4387at 4980.544 kb on + strandat 4980.603 kb on + strandat 4980.603 kb on + strandat 4980.621 kb on + strandat 4980.622 kb on - strandat 4980.622 kb on - strandat 4980.696 kb on + strandat 4980.697 kb on - strandat 4980.697 kb on - strandat 4980.723 kb on - strandat 4980.723 kb on - strandat 4980.723 kb on - strandat 4980.828 kb on + strand, within PP_4388at 4980.828 kb on + strand, within PP_4388at 4980.828 kb on + strand, within PP_4388at 4980.828 kb on + strand, within PP_4388at 4980.829 kb on - strand, within PP_4388at 4980.829 kb on - strand, within PP_4388at 4980.945 kb on + strand, within PP_4388at 4981.032 kb on + strand, within PP_4388at 4981.032 kb on + strand, within PP_4388at 4981.032 kb on + strand, within PP_4388at 4981.032 kb on + strand, within PP_4388at 4981.032 kb on + strand, within PP_4388at 4981.032 kb on + strand, within PP_4388at 4981.033 kb on - strand, within PP_4388at 4981.033 kb on - strand, within PP_4388at 4981.033 kb on - strand, within PP_4388at 4981.216 kb on + strand, within PP_4388at 4981.217 kb on - strand, within PP_4388at 4981.292 kb on - strand, within PP_4388at 4981.312 kb on + strand, within PP_4388at 4981.312 kb on + strand, within PP_4388at 4981.312 kb on + strand, within PP_4388at 4981.313 kb on - strand, within PP_4388at 4981.338 kb on + strand, within PP_4388at 4981.361 kb on - strand, within PP_4388at 4981.384 kb on + strand, within PP_4388at 4981.401 kb on + strand, within PP_4388at 4981.401 kb on + strand, within PP_4388at 4981.402 kb on - strand, within PP_4388at 4981.402 kb on - strand, within PP_4388at 4981.402 kb on - strand, within PP_4388at 4981.402 kb on - strand, within PP_4388at 4981.402 kb on - strand, within PP_4388at 4981.513 kb on + strand, within PP_4388at 4981.514 kb on - strand, within PP_4388at 4981.514 kb on - strandat 4981.572 kb on + strand, within PP_4388at 4981.609 kb on - strand, within PP_4388at 4981.609 kb on - strand, within PP_4388at 4981.609 kb on - strand, within PP_4388at 4981.647 kb on + strand, within PP_4388at 4981.647 kb on + strandat 4981.647 kb on + strand, within PP_4388at 4981.729 kb on + strand, within PP_4388at 4981.729 kb on + strand, within PP_4388at 4981.729 kb on + strand, within PP_4388at 4981.730 kb on - strand, within PP_4388at 4981.824 kb on + strandat 4981.825 kb on - strandat 4981.920 kb on + strandat 4981.920 kb on + strandat 4981.921 kb on - strandat 4981.921 kb on - strandat 4981.955 kb on + strandat 4981.955 kb on + strandat 4981.956 kb on - strandat 4981.956 kb on - strandat 4981.982 kb on - strandat 4982.060 kb on + strand, within PP_4389at 4982.149 kb on + strand, within PP_4389at 4982.149 kb on + strand, within PP_4389at 4982.149 kb on + strand, within PP_4389at 4982.149 kb on + strand, within PP_4389at 4982.150 kb on - strand, within PP_4389at 4982.150 kb on - strand, within PP_4389at 4982.198 kb on + strand, within PP_4389at 4982.199 kb on - strand, within PP_4389at 4982.199 kb on - strand, within PP_4389at 4982.266 kb on + strand, within PP_4389at 4982.267 kb on - strand, within PP_4389at 4982.428 kb on + strand, within PP_4389at 4982.428 kb on + strand, within PP_4389at 4982.429 kb on - strand, within PP_4389at 4982.641 kb on + strandat 4982.642 kb on - strandat 4982.642 kb on - strandat 4982.642 kb on - strandat 4982.661 kb on - strandat 4982.692 kb on + strandat 4982.692 kb on + strandat 4982.692 kb on + strandat 4982.692 kb on + strandat 4982.692 kb on + strandat 4982.693 kb on - strandat 4982.693 kb on - strandat 4982.821 kb on + strand, within PP_4390at 4982.822 kb on - strand, within PP_4390at 4982.825 kb on - strand, within PP_4390at 4982.830 kb on + strand, within PP_4390at 4982.830 kb on + strand, within PP_4390at 4982.830 kb on + strand, within PP_4390at 4982.831 kb on - strand, within PP_4390at 4982.867 kb on - strand, within PP_4390at 4982.907 kb on + strand, within PP_4390at 4982.907 kb on + strand, within PP_4390at 4982.907 kb on + strand, within PP_4390at 4982.907 kb on + strand, within PP_4390at 4982.908 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH7 and (C) Trisodium citrate
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4,979,914 + PP_4386 0.60 +0.5
4,979,914 + PP_4386 0.60 +0.5
4,979,914 + PP_4386 0.60 +0.6
4,979,914 + PP_4386 0.60 +0.8
4,979,914 + PP_4386 0.60 +0.9
4,979,914 + PP_4386 0.60 +0.3
4,979,915 - PP_4386 0.60 +0.7
4,979,915 - PP_4386 0.60 +0.6
4,979,915 - PP_4386 0.60 +1.7
4,980,193 + +0.1
4,980,193 + -0.4
4,980,194 - +1.1
4,980,227 + +1.2
4,980,321 + -1.3
4,980,398 + PP_4387 0.15 -1.4
4,980,398 + PP_4387 0.15 -1.2
4,980,482 + PP_4387 0.58 -0.2
4,980,482 + PP_4387 0.58 +0.2
4,980,544 + -0.6
4,980,603 + +1.1
4,980,603 + -0.1
4,980,621 + -0.4
4,980,622 - -0.4
4,980,622 - -0.5
4,980,696 + +0.6
4,980,697 - +0.5
4,980,697 - +0.6
4,980,723 - +0.9
4,980,723 - +1.3
4,980,723 - +1.2
4,980,828 + PP_4388 0.15 +0.6
4,980,828 + PP_4388 0.15 +0.6
4,980,828 + PP_4388 0.15 -0.7
4,980,828 + PP_4388 0.15 +0.5
4,980,829 - PP_4388 0.15 +0.5
4,980,829 - PP_4388 0.15 +0.3
4,980,945 + PP_4388 0.24 +1.2
4,981,032 + PP_4388 0.30 +0.1
4,981,032 + PP_4388 0.30 +0.4
4,981,032 + PP_4388 0.30 +0.9
4,981,032 + PP_4388 0.30 +0.2
4,981,032 + PP_4388 0.30 +0.8
4,981,032 + PP_4388 0.30 +1.0
4,981,033 - PP_4388 0.31 +0.7
4,981,033 - PP_4388 0.31 +0.7
4,981,033 - PP_4388 0.31 +0.9
4,981,216 + PP_4388 0.44 +0.6
4,981,217 - PP_4388 0.44 +1.0
4,981,292 - PP_4388 0.50 +0.5
4,981,312 + PP_4388 0.52 +0.7
4,981,312 + PP_4388 0.52 +1.6
4,981,312 + PP_4388 0.52 -0.1
4,981,313 - PP_4388 0.52 +1.8
4,981,338 + PP_4388 0.54 +0.8
4,981,361 - PP_4388 0.55 +1.0
4,981,384 + PP_4388 0.57 +0.3
4,981,401 + PP_4388 0.58 +0.1
4,981,401 + PP_4388 0.58 +0.9
4,981,402 - PP_4388 0.58 +1.1
4,981,402 - PP_4388 0.58 -1.2
4,981,402 - PP_4388 0.58 +0.7
4,981,402 - PP_4388 0.58 -1.0
4,981,402 - PP_4388 0.58 +0.4
4,981,513 + PP_4388 0.67 +1.0
4,981,514 - PP_4388 0.67 +1.0
4,981,514 - +0.5
4,981,572 + PP_4388 0.71 +0.2
4,981,609 - PP_4388 0.74 +0.4
4,981,609 - PP_4388 0.74 +0.7
4,981,609 - PP_4388 0.74 +0.8
4,981,647 + PP_4388 0.77 +1.1
4,981,647 + -0.1
4,981,647 + PP_4388 0.77 -0.4
4,981,729 + PP_4388 0.83 +0.3
4,981,729 + PP_4388 0.83 -0.4
4,981,729 + PP_4388 0.83 +0.5
4,981,730 - PP_4388 0.83 +1.0
4,981,824 + -0.4
4,981,825 - +0.5
4,981,920 + +0.6
4,981,920 + +1.0
4,981,921 - +0.0
4,981,921 - -0.4
4,981,955 + +0.6
4,981,955 + +0.1
4,981,956 - +0.1
4,981,956 - -0.6
4,981,982 - -0.5
4,982,060 + PP_4389 0.11 -0.7
4,982,149 + PP_4389 0.24 +0.7
4,982,149 + PP_4389 0.24 +0.2
4,982,149 + PP_4389 0.24 -0.0
4,982,149 + PP_4389 0.24 +0.2
4,982,150 - PP_4389 0.24 -0.4
4,982,150 - PP_4389 0.24 -3.8
4,982,198 + PP_4389 0.31 +1.3
4,982,199 - PP_4389 0.31 -0.5
4,982,199 - PP_4389 0.31 +1.0
4,982,266 + PP_4389 0.41 +0.5
4,982,267 - PP_4389 0.41 +0.3
4,982,428 + PP_4389 0.64 +1.0
4,982,428 + PP_4389 0.64 +1.8
4,982,429 - PP_4389 0.64 -1.2
4,982,641 + +0.3
4,982,642 - +0.4
4,982,642 - +0.4
4,982,642 - +0.4
4,982,661 - -0.4
4,982,692 + +0.4
4,982,692 + +0.4
4,982,692 + -0.3
4,982,692 + +0.7
4,982,692 + +0.8
4,982,693 - -1.1
4,982,693 - +0.2
4,982,821 + PP_4390 0.29 +0.6
4,982,822 - PP_4390 0.29 -0.1
4,982,825 - PP_4390 0.30 +0.9
4,982,830 + PP_4390 0.31 +1.3
4,982,830 + PP_4390 0.31 +0.7
4,982,830 + PP_4390 0.31 +0.6
4,982,831 - PP_4390 0.31 +1.0
4,982,867 - PP_4390 0.39 -1.2
4,982,907 + PP_4390 0.48 +1.2
4,982,907 + PP_4390 0.48 +0.7
4,982,907 + PP_4390 0.48 +0.7
4,982,907 + PP_4390 0.48 +0.6
4,982,908 - +0.2

Or see this region's nucleotide sequence