Strain Fitness in Pseudomonas putida KT2440 around PP_4383

Experiment: Growth at pH7 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4382 and PP_4383 are separated by 11 nucleotidesPP_4383 and PP_4384 are separated by 12 nucleotidesPP_4384 and PP_4385 are separated by 36 nucleotides PP_4382: PP_4382 - Peptidoglycan hydrolase FlgJ, at 4,975,616 to 4,976,770 _4382 PP_4383: PP_4383 - Flagellar P-ring protein, at 4,976,782 to 4,977,891 _4383 PP_4384: PP_4384 - Flagellar L-ring protein, at 4,977,904 to 4,978,599 _4384 PP_4385: PP_4385 - flagellar basal-body rod protein FlgG, at 4,978,636 to 4,979,421 _4385 Position (kb) 4976 4977 4978Strain fitness (log2 ratio) -1 0 1 2at 4975.782 kb on + strand, within PP_4382at 4975.782 kb on + strand, within PP_4382at 4975.807 kb on + strand, within PP_4382at 4975.808 kb on - strand, within PP_4382at 4975.833 kb on + strand, within PP_4382at 4975.834 kb on - strand, within PP_4382at 4975.842 kb on + strand, within PP_4382at 4975.842 kb on + strand, within PP_4382at 4975.843 kb on - strand, within PP_4382at 4976.031 kb on + strand, within PP_4382at 4976.429 kb on - strand, within PP_4382at 4976.532 kb on + strand, within PP_4382at 4976.532 kb on + strand, within PP_4382at 4976.532 kb on + strand, within PP_4382at 4976.532 kb on + strand, within PP_4382at 4976.532 kb on + strand, within PP_4382at 4976.533 kb on - strand, within PP_4382at 4976.533 kb on - strand, within PP_4382at 4976.533 kb on - strand, within PP_4382at 4976.533 kb on - strand, within PP_4382at 4976.544 kb on + strand, within PP_4382at 4976.750 kb on + strandat 4977.093 kb on + strand, within PP_4383at 4977.173 kb on + strand, within PP_4383at 4977.173 kb on + strand, within PP_4383at 4977.174 kb on - strand, within PP_4383at 4977.546 kb on + strand, within PP_4383at 4977.791 kb on - strandat 4977.791 kb on - strandat 4977.791 kb on - strandat 4977.791 kb on - strandat 4977.902 kb on - strandat 4977.986 kb on + strand, within PP_4384at 4977.986 kb on + strand, within PP_4384at 4977.986 kb on + strand, within PP_4384at 4977.986 kb on + strand, within PP_4384at 4977.987 kb on - strand, within PP_4384at 4977.987 kb on - strand, within PP_4384at 4977.987 kb on - strand, within PP_4384at 4977.987 kb on - strand, within PP_4384at 4978.141 kb on + strand, within PP_4384at 4978.228 kb on - strand, within PP_4384at 4978.230 kb on - strand, within PP_4384at 4978.269 kb on + strand, within PP_4384at 4978.269 kb on + strand, within PP_4384at 4978.269 kb on + strand, within PP_4384at 4978.269 kb on + strand, within PP_4384at 4978.270 kb on - strand, within PP_4384at 4978.424 kb on + strand, within PP_4384at 4978.425 kb on - strand, within PP_4384at 4978.452 kb on - strand, within PP_4384at 4978.452 kb on - strand, within PP_4384at 4978.452 kb on - strand, within PP_4384at 4978.452 kb on - strand, within PP_4384at 4978.508 kb on + strand, within PP_4384at 4978.508 kb on + strand, within PP_4384at 4978.509 kb on - strand, within PP_4384at 4978.512 kb on - strand, within PP_4384at 4978.606 kb on + strandat 4978.606 kb on + strandat 4978.606 kb on + strandat 4978.607 kb on - strandat 4978.607 kb on - strandat 4978.607 kb on - strandat 4978.637 kb on + strandat 4978.637 kb on + strandat 4978.637 kb on + strandat 4978.637 kb on + strandat 4978.637 kb on + strandat 4978.637 kb on + strandat 4978.638 kb on - strandat 4978.651 kb on - strandat 4978.703 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH7 and (C) Trisodium citrate
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4,975,782 + PP_4382 0.14 +1.0
4,975,782 + PP_4382 0.14 +0.5
4,975,807 + PP_4382 0.17 -0.3
4,975,808 - PP_4382 0.17 +0.6
4,975,833 + PP_4382 0.19 -0.3
4,975,834 - PP_4382 0.19 -0.1
4,975,842 + PP_4382 0.20 -1.1
4,975,842 + PP_4382 0.20 -0.5
4,975,843 - PP_4382 0.20 +1.1
4,976,031 + PP_4382 0.36 -0.0
4,976,429 - PP_4382 0.70 -1.0
4,976,532 + PP_4382 0.79 -0.9
4,976,532 + PP_4382 0.79 +0.6
4,976,532 + PP_4382 0.79 +0.3
4,976,532 + PP_4382 0.79 +1.4
4,976,532 + PP_4382 0.79 -0.8
4,976,533 - PP_4382 0.79 +1.2
4,976,533 - PP_4382 0.79 +1.0
4,976,533 - PP_4382 0.79 -0.4
4,976,533 - PP_4382 0.79 +0.7
4,976,544 + PP_4382 0.80 -0.0
4,976,750 + +0.7
4,977,093 + PP_4383 0.28 +1.0
4,977,173 + PP_4383 0.35 -0.1
4,977,173 + PP_4383 0.35 +0.7
4,977,174 - PP_4383 0.35 +1.2
4,977,546 + PP_4383 0.69 +0.8
4,977,791 - +0.8
4,977,791 - +0.9
4,977,791 - +1.3
4,977,791 - +0.9
4,977,902 - +2.4
4,977,986 + PP_4384 0.12 +0.9
4,977,986 + PP_4384 0.12 +0.8
4,977,986 + PP_4384 0.12 +0.3
4,977,986 + PP_4384 0.12 +0.1
4,977,987 - PP_4384 0.12 +0.7
4,977,987 - PP_4384 0.12 +0.3
4,977,987 - PP_4384 0.12 +2.1
4,977,987 - PP_4384 0.12 -0.5
4,978,141 + PP_4384 0.34 +0.3
4,978,228 - PP_4384 0.47 +1.0
4,978,230 - PP_4384 0.47 +0.2
4,978,269 + PP_4384 0.52 +0.4
4,978,269 + PP_4384 0.52 -0.7
4,978,269 + PP_4384 0.52 +1.8
4,978,269 + PP_4384 0.52 +0.3
4,978,270 - PP_4384 0.53 +0.9
4,978,424 + PP_4384 0.75 -0.6
4,978,425 - PP_4384 0.75 +1.2
4,978,452 - PP_4384 0.79 +1.5
4,978,452 - PP_4384 0.79 +0.4
4,978,452 - PP_4384 0.79 +0.3
4,978,452 - PP_4384 0.79 +0.9
4,978,508 + PP_4384 0.87 -0.2
4,978,508 + PP_4384 0.87 +0.4
4,978,509 - PP_4384 0.87 +0.2
4,978,512 - PP_4384 0.87 +1.3
4,978,606 + +1.0
4,978,606 + +0.6
4,978,606 + +0.0
4,978,607 - +1.2
4,978,607 - +0.8
4,978,607 - +0.0
4,978,637 + +0.2
4,978,637 + +0.0
4,978,637 + -0.6
4,978,637 + +0.2
4,978,637 + +0.1
4,978,637 + +1.0
4,978,638 - -1.1
4,978,651 - -0.3
4,978,703 + +0.8

Or see this region's nucleotide sequence