Strain Fitness in Pseudomonas putida KT2440 around PP_3037

Experiment: Growth at pH7 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5554 and PP_3036 are separated by 71 nucleotidesPP_3036 and PP_5555 overlap by 29 nucleotidesPP_5555 and PP_3037 overlap by 8 nucleotidesPP_3037 and PP_3038 overlap by 11 nucleotides PP_5554: PP_5554 - protein of unknown function, at 3,420,719 to 3,420,901 _5554 PP_3036: PP_3036 - conserved protein of unknown function, at 3,420,973 to 3,421,152 _3036 PP_5555: PP_5555 - conserved protein of unknown function, at 3,421,124 to 3,421,642 _5555 PP_3037: PP_3037 - C4-type zinc finger protein, DksA/TraR family, at 3,421,635 to 3,421,853 _3037 PP_3038: PP_3038 - Pyocin R2_PP, traC domain protein, at 3,421,843 to 3,424,053 _3038 Position (kb) 3421 3422Strain fitness (log2 ratio) -3 -2 -1 0 1at 3420.727 kb on - strandat 3420.730 kb on - strandat 3420.730 kb on - strandat 3420.758 kb on - strand, within PP_5554at 3420.791 kb on - strand, within PP_5554at 3420.791 kb on - strand, within PP_5554at 3420.800 kb on - strand, within PP_5554at 3420.800 kb on - strand, within PP_5554at 3420.800 kb on - strand, within PP_5554at 3420.800 kb on - strand, within PP_5554at 3420.800 kb on - strand, within PP_5554at 3420.800 kb on - strand, within PP_5554at 3420.800 kb on - strand, within PP_5554at 3420.800 kb on - strand, within PP_5554at 3420.881 kb on - strand, within PP_5554at 3420.885 kb on - strandat 3420.902 kb on - strandat 3420.902 kb on - strandat 3420.902 kb on - strandat 3420.902 kb on - strandat 3420.902 kb on - strandat 3420.933 kb on + strandat 3420.977 kb on - strandat 3421.054 kb on + strand, within PP_3036at 3421.055 kb on - strand, within PP_3036at 3421.055 kb on - strand, within PP_3036at 3421.055 kb on - strand, within PP_3036at 3421.055 kb on - strand, within PP_3036at 3421.062 kb on + strand, within PP_3036at 3421.063 kb on - strand, within PP_3036at 3421.194 kb on - strand, within PP_5555at 3421.211 kb on + strand, within PP_5555at 3421.211 kb on + strand, within PP_5555at 3421.300 kb on + strand, within PP_5555at 3421.300 kb on + strand, within PP_5555at 3421.301 kb on - strand, within PP_5555at 3421.301 kb on - strand, within PP_5555at 3421.301 kb on - strand, within PP_5555at 3421.415 kb on + strand, within PP_5555at 3421.415 kb on + strand, within PP_5555at 3421.415 kb on + strand, within PP_5555at 3421.415 kb on + strand, within PP_5555at 3421.416 kb on - strand, within PP_5555at 3421.416 kb on - strand, within PP_5555at 3421.417 kb on + strand, within PP_5555at 3421.417 kb on + strand, within PP_5555at 3421.417 kb on + strand, within PP_5555at 3421.417 kb on + strand, within PP_5555at 3421.418 kb on - strand, within PP_5555at 3421.418 kb on - strand, within PP_5555at 3421.418 kb on - strand, within PP_5555at 3421.427 kb on - strand, within PP_5555at 3421.502 kb on - strand, within PP_5555at 3421.589 kb on + strand, within PP_5555at 3421.589 kb on + strand, within PP_5555at 3421.590 kb on - strand, within PP_5555at 3421.604 kb on + strandat 3421.604 kb on + strandat 3421.605 kb on - strandat 3421.644 kb on - strandat 3421.687 kb on + strand, within PP_3037at 3421.687 kb on + strand, within PP_3037at 3421.688 kb on - strand, within PP_3037at 3421.843 kb on - strandat 3421.851 kb on + strandat 3421.851 kb on + strandat 3421.852 kb on - strandat 3421.852 kb on - strandat 3421.877 kb on - strandat 3421.966 kb on + strandat 3421.967 kb on - strandat 3421.967 kb on - strandat 3421.967 kb on - strandat 3422.196 kb on + strand, within PP_3038at 3422.221 kb on + strandat 3422.222 kb on - strand, within PP_3038at 3422.375 kb on - strand, within PP_3038at 3422.375 kb on - strand, within PP_3038at 3422.464 kb on + strand, within PP_3038at 3422.553 kb on + strand, within PP_3038at 3422.553 kb on + strand, within PP_3038at 3422.554 kb on - strand, within PP_3038at 3422.554 kb on - strand, within PP_3038at 3422.554 kb on - strand, within PP_3038at 3422.554 kb on - strand, within PP_3038at 3422.554 kb on - strand, within PP_3038at 3422.588 kb on + strand, within PP_3038at 3422.589 kb on - strand, within PP_3038at 3422.690 kb on + strand, within PP_3038at 3422.691 kb on - strand, within PP_3038at 3422.725 kb on - strand, within PP_3038

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH7 and (C) Trisodium citrate
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3,420,727 - -1.0
3,420,730 - -0.5
3,420,730 - -1.0
3,420,758 - PP_5554 0.21 +0.1
3,420,791 - PP_5554 0.39 -0.3
3,420,791 - PP_5554 0.39 +0.3
3,420,800 - PP_5554 0.44 +0.5
3,420,800 - PP_5554 0.44 +1.1
3,420,800 - PP_5554 0.44 -3.7
3,420,800 - PP_5554 0.44 +0.7
3,420,800 - PP_5554 0.44 -0.3
3,420,800 - PP_5554 0.44 +0.9
3,420,800 - PP_5554 0.44 +0.1
3,420,800 - PP_5554 0.44 -0.0
3,420,881 - PP_5554 0.89 -1.0
3,420,885 - -1.9
3,420,902 - -0.7
3,420,902 - -0.1
3,420,902 - +1.1
3,420,902 - +0.3
3,420,902 - +0.5
3,420,933 + -0.2
3,420,977 - -0.3
3,421,054 + PP_3036 0.45 -0.1
3,421,055 - PP_3036 0.46 +0.1
3,421,055 - PP_3036 0.46 -0.4
3,421,055 - PP_3036 0.46 -2.4
3,421,055 - PP_3036 0.46 -0.2
3,421,062 + PP_3036 0.49 +0.3
3,421,063 - PP_3036 0.50 +0.4
3,421,194 - PP_5555 0.13 +0.6
3,421,211 + PP_5555 0.17 -0.5
3,421,211 + PP_5555 0.17 -0.6
3,421,300 + PP_5555 0.34 -2.0
3,421,300 + PP_5555 0.34 -0.1
3,421,301 - PP_5555 0.34 +0.5
3,421,301 - PP_5555 0.34 -1.1
3,421,301 - PP_5555 0.34 +0.4
3,421,415 + PP_5555 0.56 -0.3
3,421,415 + PP_5555 0.56 +0.6
3,421,415 + PP_5555 0.56 +0.8
3,421,415 + PP_5555 0.56 -1.0
3,421,416 - PP_5555 0.56 -0.1
3,421,416 - PP_5555 0.56 -1.0
3,421,417 + PP_5555 0.56 +1.6
3,421,417 + PP_5555 0.56 +0.3
3,421,417 + PP_5555 0.56 -0.1
3,421,417 + PP_5555 0.56 -0.1
3,421,418 - PP_5555 0.57 -0.4
3,421,418 - PP_5555 0.57 -0.1
3,421,418 - PP_5555 0.57 -0.1
3,421,427 - PP_5555 0.58 +0.4
3,421,502 - PP_5555 0.73 +0.8
3,421,589 + PP_5555 0.90 +0.3
3,421,589 + PP_5555 0.90 -0.2
3,421,590 - PP_5555 0.90 +0.6
3,421,604 + -0.9
3,421,604 + -0.1
3,421,605 - +1.6
3,421,644 - -1.7
3,421,687 + PP_3037 0.24 +1.1
3,421,687 + PP_3037 0.24 +0.9
3,421,688 - PP_3037 0.24 -0.4
3,421,843 - -3.1
3,421,851 + +1.2
3,421,851 + -0.6
3,421,852 - -0.4
3,421,852 - +0.0
3,421,877 - +0.5
3,421,966 + -0.0
3,421,967 - -0.7
3,421,967 - +0.2
3,421,967 - -0.6
3,422,196 + PP_3038 0.16 +0.5
3,422,221 + -1.8
3,422,222 - PP_3038 0.17 +0.7
3,422,375 - PP_3038 0.24 -0.5
3,422,375 - PP_3038 0.24 +0.3
3,422,464 + PP_3038 0.28 -0.5
3,422,553 + PP_3038 0.32 -1.8
3,422,553 + PP_3038 0.32 -0.1
3,422,554 - PP_3038 0.32 -3.1
3,422,554 - PP_3038 0.32 -0.4
3,422,554 - PP_3038 0.32 +0.4
3,422,554 - PP_3038 0.32 +0.4
3,422,554 - PP_3038 0.32 +0.0
3,422,588 + PP_3038 0.34 -0.2
3,422,589 - PP_3038 0.34 +0.5
3,422,690 + PP_3038 0.38 -0.6
3,422,691 - PP_3038 0.38 -1.2
3,422,725 - PP_3038 0.40 +0.6

Or see this region's nucleotide sequence