Strain Fitness in Pseudomonas putida KT2440 around PP_1087

Experiment: Growth at pH7 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1086 and PP_1087 are separated by 118 nucleotidesPP_1087 and PP_1088 are separated by 370 nucleotides PP_1086: PP_1086 - dihydroorotase, at 1,244,481 to 1,245,527 _1086 PP_1087: PP_1087 - Outer membrane protein, OmpA family, at 1,245,646 to 1,246,599 _1087 PP_1088: PP_1088 - Argininosuccinate synthase, at 1,246,970 to 1,248,187 _1088 Position (kb) 1245 1246 1247Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1245.593 kb on + strandat 1245.630 kb on + strandat 1245.671 kb on - strandat 1245.813 kb on + strand, within PP_1087at 1245.814 kb on - strand, within PP_1087at 1246.035 kb on + strand, within PP_1087at 1246.035 kb on + strand, within PP_1087at 1246.036 kb on - strand, within PP_1087at 1246.054 kb on + strand, within PP_1087at 1246.055 kb on - strand, within PP_1087at 1246.055 kb on - strand, within PP_1087at 1246.118 kb on - strand, within PP_1087at 1246.118 kb on - strand, within PP_1087at 1246.118 kb on - strand, within PP_1087at 1246.126 kb on + strand, within PP_1087at 1246.162 kb on + strand, within PP_1087at 1246.163 kb on - strand, within PP_1087at 1246.163 kb on - strand, within PP_1087at 1246.255 kb on + strand, within PP_1087at 1246.255 kb on + strand, within PP_1087at 1246.255 kb on + strand, within PP_1087at 1246.256 kb on - strand, within PP_1087at 1246.256 kb on - strand, within PP_1087at 1246.256 kb on - strand, within PP_1087at 1246.327 kb on - strand, within PP_1087at 1246.433 kb on - strand, within PP_1087at 1246.847 kb on - strandat 1246.909 kb on - strandat 1246.949 kb on - strandat 1246.949 kb on - strandat 1246.993 kb on - strandat 1246.993 kb on - strandat 1246.993 kb on - strandat 1247.017 kb on + strandat 1247.017 kb on + strandat 1247.047 kb on + strandat 1247.047 kb on + strandat 1247.051 kb on + strandat 1247.051 kb on + strandat 1247.051 kb on + strandat 1247.051 kb on + strandat 1247.052 kb on - strandat 1247.052 kb on - strandat 1247.052 kb on - strandat 1247.052 kb on - strandat 1247.052 kb on - strandat 1247.150 kb on + strand, within PP_1088at 1247.150 kb on + strand, within PP_1088at 1247.150 kb on + strand, within PP_1088at 1247.151 kb on - strand, within PP_1088at 1247.151 kb on - strand, within PP_1088at 1247.151 kb on - strand, within PP_1088at 1247.151 kb on - strand, within PP_1088at 1247.369 kb on + strand, within PP_1088at 1247.369 kb on + strand, within PP_1088at 1247.369 kb on + strand, within PP_1088at 1247.370 kb on - strand, within PP_1088at 1247.447 kb on + strand, within PP_1088at 1247.447 kb on + strand, within PP_1088at 1247.448 kb on - strand, within PP_1088at 1247.448 kb on - strand, within PP_1088at 1247.534 kb on + strand, within PP_1088at 1247.535 kb on - strand, within PP_1088at 1247.557 kb on + strand, within PP_1088

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH7 and (C) Trisodium citrate
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1,245,593 + -0.4
1,245,630 + +1.0
1,245,671 - +0.7
1,245,813 + PP_1087 0.18 +1.6
1,245,814 - PP_1087 0.18 +1.0
1,246,035 + PP_1087 0.41 -1.2
1,246,035 + PP_1087 0.41 +1.0
1,246,036 - PP_1087 0.41 +1.9
1,246,054 + PP_1087 0.43 -0.9
1,246,055 - PP_1087 0.43 +1.7
1,246,055 - PP_1087 0.43 +1.3
1,246,118 - PP_1087 0.49 +0.1
1,246,118 - PP_1087 0.49 +0.6
1,246,118 - PP_1087 0.49 +1.8
1,246,126 + PP_1087 0.50 -1.8
1,246,162 + PP_1087 0.54 +0.8
1,246,163 - PP_1087 0.54 +1.1
1,246,163 - PP_1087 0.54 -0.9
1,246,255 + PP_1087 0.64 +0.6
1,246,255 + PP_1087 0.64 +0.8
1,246,255 + PP_1087 0.64 +0.8
1,246,256 - PP_1087 0.64 -1.8
1,246,256 - PP_1087 0.64 +0.9
1,246,256 - PP_1087 0.64 -0.1
1,246,327 - PP_1087 0.71 +0.4
1,246,433 - PP_1087 0.82 +1.1
1,246,847 - -3.4
1,246,909 - -3.7
1,246,949 - -2.4
1,246,949 - -3.2
1,246,993 - -2.4
1,246,993 - -0.5
1,246,993 - -2.7
1,247,017 + -2.2
1,247,017 + -2.8
1,247,047 + -1.0
1,247,047 + -3.8
1,247,051 + -2.6
1,247,051 + -0.5
1,247,051 + -3.9
1,247,051 + -3.2
1,247,052 - -3.1
1,247,052 - -2.5
1,247,052 - -0.7
1,247,052 - -3.6
1,247,052 - -2.8
1,247,150 + PP_1088 0.15 -2.7
1,247,150 + PP_1088 0.15 -2.2
1,247,150 + PP_1088 0.15 -2.1
1,247,151 - PP_1088 0.15 -1.6
1,247,151 - PP_1088 0.15 -2.9
1,247,151 - PP_1088 0.15 -3.3
1,247,151 - PP_1088 0.15 -3.7
1,247,369 + PP_1088 0.33 -2.6
1,247,369 + PP_1088 0.33 -3.9
1,247,369 + PP_1088 0.33 -3.2
1,247,370 - PP_1088 0.33 -0.9
1,247,447 + PP_1088 0.39 -1.8
1,247,447 + PP_1088 0.39 -1.7
1,247,448 - PP_1088 0.39 -2.7
1,247,448 - PP_1088 0.39 -2.3
1,247,534 + PP_1088 0.46 -2.7
1,247,535 - PP_1088 0.46 -4.0
1,247,557 + PP_1088 0.48 -3.4

Or see this region's nucleotide sequence