Experiment: Growth at pH7 and (C) Trisodium citrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4994 and PP_4995 are separated by 169 nucleotides PP_4995 and PP_4996 overlap by 1 nucleotides PP_4996 and PP_4997 are separated by 49 nucleotides
PP_4994: PP_4994 - conserved protein of unknown function, at 5,691,626 to 5,692,531
_4994
PP_4995: PP_4995 - putative protein possibly involved in the control of exopolysaccharide production, at 5,692,701 to 5,693,270
_4995
PP_4996: PP_4996 - Putative Holliday junction resolvase, at 5,693,270 to 5,693,695
_4996
PP_4997: PP_4997 - pyrimidine operon regulatory protein/uracil phosphoribosyltransferase, at 5,693,745 to 5,694,263
_4997
Position (kb) 5692
5693
5694 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5692.163 kb on + strand, within PP_4994 at 5692.163 kb on + strand, within PP_4994 at 5692.163 kb on + strand, within PP_4994 at 5692.163 kb on + strand, within PP_4994 at 5692.164 kb on - strand, within PP_4994 at 5692.164 kb on - strand, within PP_4994 at 5692.229 kb on + strand, within PP_4994 at 5692.307 kb on + strand, within PP_4994 at 5692.355 kb on + strand, within PP_4994 at 5692.356 kb on - strand, within PP_4994 at 5692.369 kb on - strand, within PP_4994 at 5692.458 kb on + strand at 5692.459 kb on - strand at 5692.525 kb on + strand at 5692.722 kb on + strand at 5692.791 kb on + strand, within PP_4995 at 5692.791 kb on + strand, within PP_4995 at 5692.791 kb on + strand, within PP_4995 at 5692.791 kb on + strand, within PP_4995 at 5692.791 kb on + strand, within PP_4995 at 5693.038 kb on + strand, within PP_4995 at 5693.038 kb on + strand at 5693.038 kb on + strand, within PP_4995 at 5693.038 kb on + strand, within PP_4995 at 5693.038 kb on + strand, within PP_4995 at 5693.038 kb on + strand, within PP_4995 at 5693.038 kb on + strand, within PP_4995 at 5693.038 kb on + strand, within PP_4995 at 5693.038 kb on + strand, within PP_4995 at 5693.039 kb on + strand, within PP_4995 at 5693.280 kb on + strand at 5693.280 kb on + strand at 5693.689 kb on + strand at 5693.690 kb on - strand at 5693.752 kb on + strand at 5693.835 kb on + strand, within PP_4997 at 5693.836 kb on - strand, within PP_4997
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH7 and (C) Trisodium citrate remove 5,692,163 + PP_4994 0.59 -3.2 5,692,163 + PP_4994 0.59 -2.4 5,692,163 + PP_4994 0.59 -3.5 5,692,163 + PP_4994 0.59 -0.6 5,692,164 - PP_4994 0.59 -4.2 5,692,164 - PP_4994 0.59 -0.2 5,692,229 + PP_4994 0.67 -2.6 5,692,307 + PP_4994 0.75 -1.0 5,692,355 + PP_4994 0.80 -1.6 5,692,356 - PP_4994 0.81 -0.2 5,692,369 - PP_4994 0.82 -3.5 5,692,458 + +0.3 5,692,459 - -3.2 5,692,525 + -0.3 5,692,722 + +0.3 5,692,791 + PP_4995 0.16 +1.5 5,692,791 + PP_4995 0.16 +1.5 5,692,791 + PP_4995 0.16 +0.8 5,692,791 + PP_4995 0.16 +0.5 5,692,791 + PP_4995 0.16 +1.5 5,693,038 + PP_4995 0.59 +1.1 5,693,038 + +2.5 5,693,038 + PP_4995 0.59 +1.4 5,693,038 + PP_4995 0.59 -2.3 5,693,038 + PP_4995 0.59 +1.1 5,693,038 + PP_4995 0.59 +1.7 5,693,038 + PP_4995 0.59 +0.9 5,693,038 + PP_4995 0.59 -0.6 5,693,038 + PP_4995 0.59 +0.5 5,693,039 + PP_4995 0.59 -0.6 5,693,280 + -4.4 5,693,280 + -0.4 5,693,689 + -2.0 5,693,690 - -0.1 5,693,752 + -2.3 5,693,835 + PP_4997 0.17 -0.9 5,693,836 - PP_4997 0.18 -2.4
Or see this region's nucleotide sequence