Strain Fitness in Pseudomonas putida KT2440 around PP_4567

Experiment: Growth at pH7 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4566 and PP_4567 overlap by 44 nucleotidesPP_4567 and PP_4568 are separated by 3 nucleotides PP_4566: PP_4566 - putative drug/metabolite transporter, at 5,186,664 to 5,187,539 _4566 PP_4567: PP_4567 - conserved protein of unknown function, at 5,187,496 to 5,188,011 _4567 PP_4568: PP_4568 - putative metabolite efflux pump, at 5,188,015 to 5,188,896 _4568 Position (kb) 5187 5188 5189Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5186.519 kb on + strandat 5186.544 kb on - strandat 5186.544 kb on - strandat 5186.544 kb on - strandat 5186.544 kb on - strandat 5186.587 kb on + strandat 5186.587 kb on + strandat 5186.588 kb on - strandat 5186.628 kb on + strandat 5186.628 kb on + strandat 5186.647 kb on + strandat 5186.647 kb on + strandat 5186.813 kb on - strandat 5186.992 kb on + strand, within PP_4566at 5186.992 kb on + strand, within PP_4566at 5186.992 kb on + strand, within PP_4566at 5186.993 kb on - strand, within PP_4566at 5186.993 kb on - strand, within PP_4566at 5186.993 kb on - strand, within PP_4566at 5187.348 kb on + strand, within PP_4566at 5187.348 kb on + strand, within PP_4566at 5187.348 kb on + strand, within PP_4566at 5187.349 kb on - strand, within PP_4566at 5187.349 kb on - strand, within PP_4566at 5187.356 kb on + strand, within PP_4566at 5187.357 kb on + strand, within PP_4566at 5187.388 kb on + strand, within PP_4566at 5187.430 kb on + strand, within PP_4566at 5187.430 kb on + strand, within PP_4566at 5187.431 kb on - strand, within PP_4566at 5187.431 kb on - strand, within PP_4566at 5187.478 kb on + strandat 5187.478 kb on + strandat 5187.478 kb on + strandat 5187.478 kb on + strandat 5187.479 kb on - strandat 5187.566 kb on - strand, within PP_4567at 5187.608 kb on - strand, within PP_4567at 5187.658 kb on + strand, within PP_4567at 5187.674 kb on + strand, within PP_4567at 5187.674 kb on + strand, within PP_4567at 5187.674 kb on + strand, within PP_4567at 5187.674 kb on + strand, within PP_4567at 5187.674 kb on + strand, within PP_4567at 5187.674 kb on + strand, within PP_4567at 5187.675 kb on - strand, within PP_4567at 5187.675 kb on - strand, within PP_4567at 5187.675 kb on - strand, within PP_4567at 5187.688 kb on + strand, within PP_4567at 5187.689 kb on - strand, within PP_4567at 5187.689 kb on - strand, within PP_4567at 5187.822 kb on - strand, within PP_4567at 5187.914 kb on - strand, within PP_4567at 5187.925 kb on + strand, within PP_4567at 5187.925 kb on + strand, within PP_4567at 5187.925 kb on + strand, within PP_4567at 5187.926 kb on - strand, within PP_4567at 5187.928 kb on + strand, within PP_4567at 5187.928 kb on + strand, within PP_4567at 5187.928 kb on + strandat 5187.929 kb on - strand, within PP_4567at 5187.929 kb on - strand, within PP_4567at 5187.929 kb on - strand, within PP_4567at 5187.929 kb on - strand, within PP_4567at 5187.929 kb on - strand, within PP_4567at 5188.016 kb on + strandat 5188.016 kb on + strandat 5188.160 kb on + strand, within PP_4568at 5188.160 kb on + strand, within PP_4568at 5188.161 kb on - strand, within PP_4568at 5188.161 kb on - strand, within PP_4568at 5188.375 kb on - strand, within PP_4568at 5188.450 kb on + strand, within PP_4568at 5188.476 kb on - strand, within PP_4568at 5188.573 kb on + strand, within PP_4568at 5188.573 kb on + strand, within PP_4568at 5188.574 kb on - strand, within PP_4568at 5188.614 kb on + strand, within PP_4568at 5188.631 kb on + strand, within PP_4568at 5188.631 kb on + strand, within PP_4568at 5188.643 kb on + strand, within PP_4568at 5188.718 kb on - strand, within PP_4568at 5188.854 kb on + strandat 5188.854 kb on + strandat 5188.855 kb on - strandat 5188.911 kb on + strandat 5188.911 kb on + strandat 5188.911 kb on + strandat 5188.912 kb on - strandat 5188.912 kb on - strandat 5188.914 kb on + strandat 5188.914 kb on + strandat 5188.914 kb on + strandat 5188.914 kb on + strandat 5188.922 kb on + strandat 5188.923 kb on - strandat 5188.975 kb on + strandat 5188.976 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH7 and (C) Trisodium citrate
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5,186,519 + -3.0
5,186,544 - +0.7
5,186,544 - -0.2
5,186,544 - -3.0
5,186,544 - -1.7
5,186,587 + -3.8
5,186,587 + +0.8
5,186,588 - -1.3
5,186,628 + +0.3
5,186,628 + +1.0
5,186,647 + -0.0
5,186,647 + +1.8
5,186,813 - +1.0
5,186,992 + PP_4566 0.37 +0.2
5,186,992 + PP_4566 0.37 +1.6
5,186,992 + PP_4566 0.37 +1.1
5,186,993 - PP_4566 0.38 +1.0
5,186,993 - PP_4566 0.38 +1.1
5,186,993 - PP_4566 0.38 +0.0
5,187,348 + PP_4566 0.78 -0.7
5,187,348 + PP_4566 0.78 -2.8
5,187,348 + PP_4566 0.78 +0.7
5,187,349 - PP_4566 0.78 -3.3
5,187,349 - PP_4566 0.78 +2.3
5,187,356 + PP_4566 0.79 -1.4
5,187,357 + PP_4566 0.79 +1.7
5,187,388 + PP_4566 0.83 +0.4
5,187,430 + PP_4566 0.87 +1.0
5,187,430 + PP_4566 0.87 -3.7
5,187,431 - PP_4566 0.88 +1.4
5,187,431 - PP_4566 0.88 +1.9
5,187,478 + -0.3
5,187,478 + -0.5
5,187,478 + +1.9
5,187,478 + -2.8
5,187,479 - -0.8
5,187,566 - PP_4567 0.14 +0.0
5,187,608 - PP_4567 0.22 +1.3
5,187,658 + PP_4567 0.31 -2.9
5,187,674 + PP_4567 0.34 +0.5
5,187,674 + PP_4567 0.34 +0.5
5,187,674 + PP_4567 0.34 +1.0
5,187,674 + PP_4567 0.34 +1.7
5,187,674 + PP_4567 0.34 -3.5
5,187,674 + PP_4567 0.34 -0.3
5,187,675 - PP_4567 0.35 +0.1
5,187,675 - PP_4567 0.35 +1.5
5,187,675 - PP_4567 0.35 -0.4
5,187,688 + PP_4567 0.37 +0.5
5,187,689 - PP_4567 0.37 -0.3
5,187,689 - PP_4567 0.37 +1.1
5,187,822 - PP_4567 0.63 +1.0
5,187,914 - PP_4567 0.81 +0.5
5,187,925 + PP_4567 0.83 +0.2
5,187,925 + PP_4567 0.83 +0.4
5,187,925 + PP_4567 0.83 -2.3
5,187,926 - PP_4567 0.83 -3.0
5,187,928 + PP_4567 0.84 +1.3
5,187,928 + PP_4567 0.84 -0.2
5,187,928 + +0.3
5,187,929 - PP_4567 0.84 +1.2
5,187,929 - PP_4567 0.84 +1.0
5,187,929 - PP_4567 0.84 +1.5
5,187,929 - PP_4567 0.84 +0.1
5,187,929 - PP_4567 0.84 -3.3
5,188,016 + +0.4
5,188,016 + -0.7
5,188,160 + PP_4568 0.16 -1.1
5,188,160 + PP_4568 0.16 +0.6
5,188,161 - PP_4568 0.17 -0.8
5,188,161 - PP_4568 0.17 +1.0
5,188,375 - PP_4568 0.41 +0.1
5,188,450 + PP_4568 0.49 +1.6
5,188,476 - PP_4568 0.52 -3.5
5,188,573 + PP_4568 0.63 -2.9
5,188,573 + PP_4568 0.63 +0.3
5,188,574 - PP_4568 0.63 +0.7
5,188,614 + PP_4568 0.68 -0.7
5,188,631 + PP_4568 0.70 +0.6
5,188,631 + PP_4568 0.70 -0.3
5,188,643 + PP_4568 0.71 +0.8
5,188,718 - PP_4568 0.80 +0.4
5,188,854 + -2.3
5,188,854 + +0.0
5,188,855 - -1.4
5,188,911 + +0.7
5,188,911 + -1.4
5,188,911 + +0.8
5,188,912 - +1.0
5,188,912 - +2.2
5,188,914 + -3.1
5,188,914 + -0.4
5,188,914 + +1.0
5,188,914 + +0.1
5,188,922 + -0.3
5,188,923 - +0.4
5,188,975 + +0.9
5,188,976 - +1.6

Or see this region's nucleotide sequence