Experiment: Growth at pH7 and (C) Trisodium citrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4295 and PP_4296 are separated by 122 nucleotides PP_4296 and PP_4297 are separated by 257 nucleotides PP_4297 and PP_4298 are separated by 54 nucleotides PP_4298 and PP_4299 are separated by 152 nucleotides
PP_4295: PP_4295 - TetR family transcriptional regulator, at 4,885,510 to 4,886,121
_4295
PP_4296: PP_4296 - conserved exported protein of unknown function, at 4,886,244 to 4,886,684
_4296
PP_4297: PP_4297 - glyoxylate carboligase, at 4,886,942 to 4,888,717
_4297
PP_4298: PP_4298 - hydroxypyruvate isomerase, at 4,888,772 to 4,889,554
_4298
PP_4299: PP_4299 - tartronate semialdehyde reductase, at 4,889,707 to 4,890,600
_4299
Position (kb) 4886
4887
4888
4889 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4885.993 kb on + strand, within PP_4295 at 4885.993 kb on + strand, within PP_4295 at 4885.994 kb on - strand, within PP_4295 at 4885.994 kb on - strand, within PP_4295 at 4885.994 kb on - strand, within PP_4295 at 4885.994 kb on - strand, within PP_4295 at 4886.085 kb on + strand at 4886.085 kb on + strand at 4886.086 kb on - strand at 4886.086 kb on - strand at 4886.237 kb on + strand at 4886.237 kb on + strand at 4886.238 kb on - strand at 4886.245 kb on + strand at 4886.324 kb on + strand, within PP_4296 at 4886.325 kb on - strand, within PP_4296 at 4886.673 kb on - strand at 4886.793 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.886 kb on + strand at 4886.887 kb on - strand at 4886.887 kb on - strand at 4886.887 kb on - strand at 4886.887 kb on - strand at 4886.887 kb on - strand at 4886.887 kb on - strand at 4886.887 kb on - strand at 4886.887 kb on - strand at 4886.887 kb on - strand at 4886.887 kb on - strand at 4886.887 kb on - strand at 4886.887 kb on - strand at 4886.887 kb on - strand at 4886.887 kb on - strand at 4886.887 kb on - strand at 4886.887 kb on - strand at 4886.887 kb on - strand at 4886.887 kb on - strand at 4886.887 kb on - strand at 4886.887 kb on - strand at 4886.887 kb on - strand at 4886.887 kb on - strand at 4886.911 kb on - strand at 4886.997 kb on + strand at 4886.997 kb on + strand at 4887.002 kb on - strand at 4887.123 kb on - strand, within PP_4297 at 4887.203 kb on + strand, within PP_4297 at 4887.362 kb on + strand, within PP_4297 at 4887.363 kb on - strand, within PP_4297 at 4887.383 kb on + strand, within PP_4297 at 4887.384 kb on - strand, within PP_4297 at 4887.384 kb on - strand, within PP_4297 at 4887.384 kb on - strand, within PP_4297 at 4887.384 kb on - strand, within PP_4297 at 4887.384 kb on - strand, within PP_4297 at 4887.384 kb on - strand, within PP_4297 at 4887.384 kb on - strand, within PP_4297 at 4887.473 kb on + strand, within PP_4297 at 4887.513 kb on + strand, within PP_4297 at 4887.514 kb on - strand, within PP_4297 at 4887.815 kb on + strand, within PP_4297 at 4887.911 kb on - strand, within PP_4297 at 4888.067 kb on + strand, within PP_4297 at 4888.068 kb on - strand, within PP_4297 at 4888.106 kb on + strand, within PP_4297 at 4888.107 kb on - strand, within PP_4297 at 4888.107 kb on - strand, within PP_4297 at 4888.107 kb on - strand, within PP_4297 at 4888.160 kb on + strand, within PP_4297 at 4888.160 kb on + strand, within PP_4297 at 4888.160 kb on + strand, within PP_4297 at 4888.161 kb on - strand, within PP_4297 at 4888.280 kb on + strand, within PP_4297 at 4888.281 kb on - strand, within PP_4297 at 4888.281 kb on - strand, within PP_4297 at 4888.337 kb on + strand, within PP_4297 at 4888.338 kb on - strand, within PP_4297 at 4888.338 kb on - strand, within PP_4297 at 4888.347 kb on + strand, within PP_4297 at 4888.348 kb on - strand, within PP_4297 at 4888.409 kb on + strand, within PP_4297 at 4888.410 kb on - strand, within PP_4297 at 4888.410 kb on - strand, within PP_4297 at 4888.416 kb on + strand, within PP_4297 at 4888.417 kb on - strand, within PP_4297 at 4888.417 kb on - strand, within PP_4297 at 4888.460 kb on + strand at 4888.460 kb on + strand, within PP_4297 at 4888.461 kb on - strand, within PP_4297 at 4888.461 kb on - strand, within PP_4297 at 4888.883 kb on + strand, within PP_4298 at 4889.049 kb on - strand, within PP_4298 at 4889.049 kb on - strand, within PP_4298 at 4889.068 kb on + strand, within PP_4298 at 4889.069 kb on - strand, within PP_4298 at 4889.128 kb on + strand, within PP_4298 at 4889.129 kb on - strand, within PP_4298 at 4889.129 kb on - strand, within PP_4298 at 4889.231 kb on + strand, within PP_4298 at 4889.232 kb on - strand, within PP_4298 at 4889.232 kb on - strand, within PP_4298 at 4889.232 kb on - strand, within PP_4298 at 4889.300 kb on + strand, within PP_4298 at 4889.300 kb on + strand, within PP_4298 at 4889.301 kb on - strand, within PP_4298 at 4889.301 kb on - strand, within PP_4298 at 4889.301 kb on - strand, within PP_4298 at 4889.309 kb on + strand, within PP_4298 at 4889.309 kb on + strand, within PP_4298 at 4889.309 kb on + strand, within PP_4298 at 4889.309 kb on + strand, within PP_4298 at 4889.309 kb on + strand, within PP_4298 at 4889.310 kb on - strand, within PP_4298 at 4889.432 kb on + strand, within PP_4298 at 4889.433 kb on - strand, within PP_4298 at 4889.433 kb on - strand, within PP_4298 at 4889.433 kb on - strand, within PP_4298 at 4889.433 kb on - strand, within PP_4298 at 4889.433 kb on - strand, within PP_4298 at 4889.680 kb on - strand at 4889.688 kb on + strand at 4889.689 kb on - strand at 4889.689 kb on - strand at 4889.689 kb on - strand at 4889.712 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH7 and (C) Trisodium citrate remove 4,885,993 + PP_4295 0.79 -0.2 4,885,993 + PP_4295 0.79 -0.7 4,885,994 - PP_4295 0.79 -2.7 4,885,994 - PP_4295 0.79 -0.4 4,885,994 - PP_4295 0.79 +0.9 4,885,994 - PP_4295 0.79 +0.7 4,886,085 + +1.1 4,886,085 + +0.4 4,886,086 - +1.3 4,886,086 - +0.6 4,886,237 + +0.6 4,886,237 + -3.2 4,886,238 - +1.1 4,886,245 + +0.0 4,886,324 + PP_4296 0.18 -0.9 4,886,325 - PP_4296 0.18 -2.9 4,886,673 - +0.7 4,886,793 + -0.0 4,886,886 + +0.3 4,886,886 + +0.0 4,886,886 + +0.0 4,886,886 + +0.6 4,886,886 + +0.5 4,886,886 + -3.3 4,886,886 + -0.3 4,886,886 + +0.0 4,886,886 + +0.6 4,886,886 + -0.1 4,886,886 + -4.0 4,886,886 + -3.3 4,886,886 + +3.0 4,886,886 + -2.5 4,886,886 + -1.7 4,886,886 + -2.9 4,886,886 + -0.2 4,886,886 + -1.0 4,886,886 + -0.7 4,886,886 + -0.1 4,886,886 + -1.0 4,886,886 + +0.9 4,886,886 + +0.6 4,886,886 + -1.0 4,886,886 + +0.1 4,886,886 + +0.8 4,886,886 + -0.8 4,886,886 + -1.9 4,886,886 + +1.4 4,886,886 + -0.7 4,886,886 + -3.5 4,886,886 + -0.0 4,886,886 + -3.0 4,886,886 + -0.9 4,886,886 + -0.1 4,886,886 + +1.0 4,886,887 - +0.0 4,886,887 - -2.4 4,886,887 - -0.4 4,886,887 - +0.4 4,886,887 - +0.2 4,886,887 - -3.1 4,886,887 - +1.1 4,886,887 - -0.9 4,886,887 - +0.6 4,886,887 - -0.9 4,886,887 - -2.2 4,886,887 - +1.0 4,886,887 - -2.4 4,886,887 - +0.4 4,886,887 - -0.7 4,886,887 - -0.7 4,886,887 - -0.1 4,886,887 - +1.7 4,886,887 - +1.0 4,886,887 - +0.3 4,886,887 - +2.3 4,886,887 - +0.9 4,886,911 - +0.9 4,886,997 + -0.6 4,886,997 + -2.8 4,887,002 - +2.6 4,887,123 - PP_4297 0.10 -2.3 4,887,203 + PP_4297 0.15 -0.3 4,887,362 + PP_4297 0.24 -0.3 4,887,363 - PP_4297 0.24 +0.2 4,887,383 + PP_4297 0.25 -2.4 4,887,384 - PP_4297 0.25 +0.4 4,887,384 - PP_4297 0.25 +0.9 4,887,384 - PP_4297 0.25 -0.7 4,887,384 - PP_4297 0.25 -2.0 4,887,384 - PP_4297 0.25 -0.1 4,887,384 - PP_4297 0.25 -4.0 4,887,384 - PP_4297 0.25 -2.9 4,887,473 + PP_4297 0.30 +0.1 4,887,513 + PP_4297 0.32 +0.5 4,887,514 - PP_4297 0.32 +0.6 4,887,815 + PP_4297 0.49 +1.9 4,887,911 - PP_4297 0.55 -0.2 4,888,067 + PP_4297 0.63 +0.4 4,888,068 - PP_4297 0.63 +1.3 4,888,106 + PP_4297 0.66 +0.4 4,888,107 - PP_4297 0.66 -0.6 4,888,107 - PP_4297 0.66 -1.4 4,888,107 - PP_4297 0.66 -0.5 4,888,160 + PP_4297 0.69 -0.2 4,888,160 + PP_4297 0.69 +0.3 4,888,160 + PP_4297 0.69 -3.7 4,888,161 - PP_4297 0.69 +3.0 4,888,280 + PP_4297 0.75 +2.1 4,888,281 - PP_4297 0.75 -0.5 4,888,281 - PP_4297 0.75 -2.0 4,888,337 + PP_4297 0.79 +0.2 4,888,338 - PP_4297 0.79 -1.3 4,888,338 - PP_4297 0.79 +1.1 4,888,347 + PP_4297 0.79 -0.0 4,888,348 - PP_4297 0.79 +2.5 4,888,409 + PP_4297 0.83 +0.6 4,888,410 - PP_4297 0.83 -4.3 4,888,410 - PP_4297 0.83 -3.7 4,888,416 + PP_4297 0.83 -1.1 4,888,417 - PP_4297 0.83 -0.5 4,888,417 - PP_4297 0.83 +0.9 4,888,460 + +3.1 4,888,460 + PP_4297 0.85 +0.2 4,888,461 - PP_4297 0.86 +0.4 4,888,461 - PP_4297 0.86 -2.1 4,888,883 + PP_4298 0.14 +1.1 4,889,049 - PP_4298 0.35 +0.3 4,889,049 - PP_4298 0.35 +0.7 4,889,068 + PP_4298 0.38 +1.4 4,889,069 - PP_4298 0.38 +1.0 4,889,128 + PP_4298 0.45 -0.5 4,889,129 - PP_4298 0.46 +1.4 4,889,129 - PP_4298 0.46 +1.2 4,889,231 + PP_4298 0.59 +0.7 4,889,232 - PP_4298 0.59 +0.6 4,889,232 - PP_4298 0.59 +0.8 4,889,232 - PP_4298 0.59 +0.4 4,889,300 + PP_4298 0.67 +0.8 4,889,300 + PP_4298 0.67 -2.6 4,889,301 - PP_4298 0.68 -0.1 4,889,301 - PP_4298 0.68 -0.1 4,889,301 - PP_4298 0.68 -0.5 4,889,309 + PP_4298 0.69 +0.4 4,889,309 + PP_4298 0.69 +0.6 4,889,309 + PP_4298 0.69 -0.6 4,889,309 + PP_4298 0.69 +0.4 4,889,309 + PP_4298 0.69 -2.2 4,889,310 - PP_4298 0.69 -0.7 4,889,432 + PP_4298 0.84 -1.5 4,889,433 - PP_4298 0.84 -1.3 4,889,433 - PP_4298 0.84 +0.7 4,889,433 - PP_4298 0.84 +1.1 4,889,433 - PP_4298 0.84 -3.0 4,889,433 - PP_4298 0.84 +1.5 4,889,680 - -3.8 4,889,688 + +0.4 4,889,689 - -0.1 4,889,689 - -2.8 4,889,689 - -2.7 4,889,712 + -0.9
Or see this region's nucleotide sequence