Strain Fitness in Pseudomonas putida KT2440 around PP_3607

Experiment: Growth at pH7 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3606 and PP_3607 are separated by 113 nucleotidesPP_3607 and PP_3608 are separated by 109 nucleotides PP_3606: PP_3606 - quinone oxidoreductase, at 4,097,715 to 4,098,689 _3606 PP_3607: PP_3607 - conserved membrane protein of unknown function, at 4,098,803 to 4,100,017 _3607 PP_3608: PP_3608 - Transcriptional regulator, LysR family, at 4,100,127 to 4,101,056 _3608 Position (kb) 4098 4099 4100 4101Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4097.823 kb on - strand, within PP_3606at 4097.866 kb on + strand, within PP_3606at 4097.985 kb on + strand, within PP_3606at 4097.986 kb on - strand, within PP_3606at 4098.052 kb on + strand, within PP_3606at 4098.057 kb on + strand, within PP_3606at 4098.057 kb on + strand, within PP_3606at 4098.178 kb on - strand, within PP_3606at 4098.186 kb on + strand, within PP_3606at 4098.187 kb on - strand, within PP_3606at 4098.253 kb on + strand, within PP_3606at 4098.253 kb on + strand, within PP_3606at 4098.254 kb on - strand, within PP_3606at 4098.287 kb on - strand, within PP_3606at 4098.287 kb on - strand, within PP_3606at 4098.304 kb on + strand, within PP_3606at 4098.304 kb on + strand, within PP_3606at 4098.304 kb on + strand, within PP_3606at 4098.305 kb on - strand, within PP_3606at 4098.305 kb on - strand, within PP_3606at 4098.305 kb on - strand, within PP_3606at 4098.305 kb on - strand, within PP_3606at 4098.409 kb on + strand, within PP_3606at 4098.409 kb on + strand, within PP_3606at 4098.409 kb on + strand, within PP_3606at 4098.409 kb on + strand, within PP_3606at 4098.410 kb on - strand, within PP_3606at 4098.410 kb on - strand, within PP_3606at 4098.410 kb on - strand, within PP_3606at 4098.627 kb on + strandat 4098.627 kb on + strandat 4098.628 kb on - strandat 4098.665 kb on + strandat 4098.666 kb on - strandat 4098.823 kb on + strandat 4098.823 kb on + strandat 4098.824 kb on - strandat 4098.870 kb on - strandat 4098.885 kb on + strandat 4098.914 kb on + strandat 4098.914 kb on + strandat 4098.914 kb on + strandat 4098.914 kb on + strandat 4098.914 kb on + strandat 4098.914 kb on + strandat 4098.915 kb on - strandat 4098.915 kb on - strandat 4098.915 kb on - strandat 4098.915 kb on - strandat 4098.915 kb on - strandat 4098.915 kb on - strandat 4098.915 kb on - strandat 4098.915 kb on - strandat 4098.915 kb on - strandat 4098.915 kb on - strandat 4098.919 kb on + strandat 4098.920 kb on - strandat 4098.942 kb on + strand, within PP_3607at 4098.943 kb on - strand, within PP_3607at 4098.943 kb on - strand, within PP_3607at 4098.943 kb on - strand, within PP_3607at 4098.943 kb on - strand, within PP_3607at 4098.964 kb on - strand, within PP_3607at 4098.981 kb on + strand, within PP_3607at 4099.088 kb on + strand, within PP_3607at 4099.106 kb on + strand, within PP_3607at 4099.240 kb on + strand, within PP_3607at 4099.240 kb on + strand, within PP_3607at 4099.241 kb on - strand, within PP_3607at 4099.278 kb on + strand, within PP_3607at 4099.588 kb on + strand, within PP_3607at 4099.816 kb on + strand, within PP_3607at 4099.816 kb on + strand, within PP_3607at 4099.817 kb on - strand, within PP_3607at 4099.857 kb on + strand, within PP_3607at 4099.857 kb on + strand, within PP_3607at 4099.898 kb on + strandat 4099.898 kb on + strandat 4099.898 kb on + strandat 4099.898 kb on + strandat 4099.899 kb on - strandat 4100.038 kb on + strandat 4100.038 kb on + strandat 4100.053 kb on + strandat 4100.055 kb on + strandat 4100.055 kb on + strandat 4100.056 kb on - strandat 4100.056 kb on - strandat 4100.056 kb on - strandat 4100.056 kb on - strandat 4100.082 kb on + strandat 4100.082 kb on + strandat 4100.083 kb on - strandat 4100.089 kb on - strandat 4100.104 kb on + strandat 4100.463 kb on + strand, within PP_3608at 4100.464 kb on - strand, within PP_3608at 4100.737 kb on + strand, within PP_3608at 4100.737 kb on + strand, within PP_3608at 4100.737 kb on + strand, within PP_3608at 4100.737 kb on + strand, within PP_3608at 4100.737 kb on + strand, within PP_3608at 4100.737 kb on + strand, within PP_3608at 4100.737 kb on + strand, within PP_3608at 4100.738 kb on - strand, within PP_3608at 4100.738 kb on - strand, within PP_3608at 4100.738 kb on - strand, within PP_3608at 4100.738 kb on - strand, within PP_3608at 4100.738 kb on - strand, within PP_3608at 4100.738 kb on - strand, within PP_3608at 4100.738 kb on - strand, within PP_3608at 4100.738 kb on - strand, within PP_3608at 4100.738 kb on - strand, within PP_3608at 4100.810 kb on + strand, within PP_3608at 4100.811 kb on - strand, within PP_3608

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH7 and (C) Trisodium citrate
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4,097,823 - PP_3606 0.11 +0.2
4,097,866 + PP_3606 0.15 +0.4
4,097,985 + PP_3606 0.28 +0.5
4,097,986 - PP_3606 0.28 +1.1
4,098,052 + PP_3606 0.35 -1.5
4,098,057 + PP_3606 0.35 +0.6
4,098,057 + PP_3606 0.35 +2.2
4,098,178 - PP_3606 0.47 +0.4
4,098,186 + PP_3606 0.48 -2.1
4,098,187 - PP_3606 0.48 +0.3
4,098,253 + PP_3606 0.55 +0.9
4,098,253 + PP_3606 0.55 +0.7
4,098,254 - PP_3606 0.55 -3.1
4,098,287 - PP_3606 0.59 +1.6
4,098,287 - PP_3606 0.59 -0.3
4,098,304 + PP_3606 0.60 -0.2
4,098,304 + PP_3606 0.60 -0.6
4,098,304 + PP_3606 0.60 -0.6
4,098,305 - PP_3606 0.61 +0.0
4,098,305 - PP_3606 0.61 +0.6
4,098,305 - PP_3606 0.61 -1.5
4,098,305 - PP_3606 0.61 -4.0
4,098,409 + PP_3606 0.71 -3.0
4,098,409 + PP_3606 0.71 -1.5
4,098,409 + PP_3606 0.71 +0.3
4,098,409 + PP_3606 0.71 -1.6
4,098,410 - PP_3606 0.71 +0.7
4,098,410 - PP_3606 0.71 -1.7
4,098,410 - PP_3606 0.71 -1.9
4,098,627 + -0.7
4,098,627 + +1.2
4,098,628 - +1.3
4,098,665 + -1.1
4,098,666 - +0.1
4,098,823 + +0.2
4,098,823 + +1.0
4,098,824 - -0.3
4,098,870 - +0.7
4,098,885 + -0.6
4,098,914 + +0.8
4,098,914 + +0.2
4,098,914 + +0.4
4,098,914 + -0.5
4,098,914 + -0.2
4,098,914 + -1.0
4,098,915 - +1.4
4,098,915 - -0.1
4,098,915 - +0.9
4,098,915 - -0.4
4,098,915 - +0.4
4,098,915 - +0.6
4,098,915 - -0.1
4,098,915 - -0.3
4,098,915 - +0.9
4,098,915 - -1.8
4,098,919 + -1.2
4,098,920 - -0.8
4,098,942 + PP_3607 0.11 -0.0
4,098,943 - PP_3607 0.12 +0.4
4,098,943 - PP_3607 0.12 -1.3
4,098,943 - PP_3607 0.12 -1.4
4,098,943 - PP_3607 0.12 -2.4
4,098,964 - PP_3607 0.13 -0.6
4,098,981 + PP_3607 0.15 -1.5
4,099,088 + PP_3607 0.23 -2.6
4,099,106 + PP_3607 0.25 -0.2
4,099,240 + PP_3607 0.36 -2.2
4,099,240 + PP_3607 0.36 -1.1
4,099,241 - PP_3607 0.36 -3.2
4,099,278 + PP_3607 0.39 -1.2
4,099,588 + PP_3607 0.65 +1.2
4,099,816 + PP_3607 0.83 +1.0
4,099,816 + PP_3607 0.83 -0.4
4,099,817 - PP_3607 0.83 +1.3
4,099,857 + PP_3607 0.87 +0.1
4,099,857 + PP_3607 0.87 -4.3
4,099,898 + +0.5
4,099,898 + +0.4
4,099,898 + -0.5
4,099,898 + -0.2
4,099,899 - +1.6
4,100,038 + -0.4
4,100,038 + -2.3
4,100,053 + -1.4
4,100,055 + +0.1
4,100,055 + +1.0
4,100,056 - -0.8
4,100,056 - +0.1
4,100,056 - -0.9
4,100,056 - +0.2
4,100,082 + -3.4
4,100,082 + +0.4
4,100,083 - +0.4
4,100,089 - +0.2
4,100,104 + +0.0
4,100,463 + PP_3608 0.36 +1.0
4,100,464 - PP_3608 0.36 +0.8
4,100,737 + PP_3608 0.66 -1.0
4,100,737 + PP_3608 0.66 +0.5
4,100,737 + PP_3608 0.66 -1.7
4,100,737 + PP_3608 0.66 -1.8
4,100,737 + PP_3608 0.66 +0.4
4,100,737 + PP_3608 0.66 -3.6
4,100,737 + PP_3608 0.66 -0.8
4,100,738 - PP_3608 0.66 -0.4
4,100,738 - PP_3608 0.66 -0.9
4,100,738 - PP_3608 0.66 -1.2
4,100,738 - PP_3608 0.66 -0.4
4,100,738 - PP_3608 0.66 +0.4
4,100,738 - PP_3608 0.66 -0.4
4,100,738 - PP_3608 0.66 -2.3
4,100,738 - PP_3608 0.66 +0.4
4,100,738 - PP_3608 0.66 +1.9
4,100,810 + PP_3608 0.73 -0.2
4,100,811 - PP_3608 0.74 +0.2

Or see this region's nucleotide sequence