Experiment: Growth at pH7 and (C) Trisodium citrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5452 and PP_0642 overlap by 11 nucleotides PP_0642 and PP_0643 are separated by 31 nucleotides PP_0643 and PP_0645 are separated by 167 nucleotides PP_0645 and PP_0646 are separated by 250 nucleotides
PP_5452: PP_5452 - protein of unknown function, at 753,744 to 753,926
_5452
PP_0642: PP_0642 - conserved membrane protein of unknown function, at 753,916 to 754,530
_0642
PP_0643: PP_0643 - protein of unknown function, at 754,562 to 754,744
_0643
PP_0645: PP_0645 - protein of unknown function, at 754,912 to 755,154
_0645
PP_0646: PP_0646 - conserved protein of unknown function, at 755,405 to 756,805
_0646
Position (kb) 754
755
756 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 753.915 kb on + strand at 753.915 kb on + strand at 753.915 kb on + strand at 753.941 kb on - strand at 753.959 kb on + strand at 753.959 kb on + strand at 753.959 kb on + strand at 754.210 kb on - strand, within PP_0642 at 754.229 kb on + strand, within PP_0642 at 754.432 kb on + strand, within PP_0642 at 754.432 kb on + strand, within PP_0642 at 754.432 kb on + strand, within PP_0642 at 754.433 kb on - strand, within PP_0642 at 754.664 kb on + strand, within PP_0643 at 754.664 kb on + strand, within PP_0643 at 754.665 kb on - strand, within PP_0643 at 754.856 kb on + strand at 754.857 kb on - strand at 754.857 kb on - strand at 754.947 kb on + strand, within PP_0645 at 754.947 kb on + strand, within PP_0645 at 754.948 kb on - strand, within PP_0645 at 754.948 kb on - strand, within PP_0645 at 755.009 kb on + strand, within PP_0645 at 755.009 kb on + strand, within PP_0645 at 755.010 kb on - strand, within PP_0645 at 755.010 kb on - strand, within PP_0645 at 755.040 kb on + strand, within PP_0645 at 755.041 kb on - strand, within PP_0645 at 755.064 kb on + strand, within PP_0645 at 755.104 kb on + strand, within PP_0645 at 755.105 kb on - strand, within PP_0645 at 755.105 kb on - strand, within PP_0645 at 755.105 kb on - strand, within PP_0645 at 755.123 kb on + strand, within PP_0645 at 755.123 kb on + strand, within PP_0645 at 755.123 kb on + strand, within PP_0645 at 755.124 kb on - strand, within PP_0645 at 755.196 kb on + strand at 755.197 kb on - strand at 755.197 kb on - strand at 755.197 kb on - strand at 755.197 kb on - strand at 755.197 kb on - strand at 755.197 kb on - strand at 755.201 kb on + strand at 755.201 kb on + strand at 755.232 kb on - strand at 755.266 kb on - strand at 755.266 kb on - strand at 755.281 kb on - strand at 755.281 kb on - strand at 755.291 kb on + strand at 755.291 kb on + strand at 755.292 kb on - strand at 755.297 kb on + strand at 755.298 kb on - strand at 755.298 kb on - strand at 755.298 kb on - strand at 755.359 kb on + strand at 755.359 kb on + strand at 755.359 kb on + strand at 755.359 kb on + strand at 755.359 kb on + strand at 755.359 kb on + strand at 755.360 kb on - strand at 755.360 kb on - strand at 755.360 kb on - strand at 755.360 kb on - strand at 755.366 kb on + strand at 755.366 kb on + strand at 755.367 kb on - strand at 755.382 kb on + strand at 755.382 kb on + strand at 755.382 kb on + strand at 755.439 kb on + strand at 755.439 kb on + strand at 755.439 kb on + strand at 755.440 kb on - strand at 755.440 kb on - strand at 755.631 kb on + strand, within PP_0646 at 755.631 kb on + strand, within PP_0646 at 755.631 kb on + strand, within PP_0646 at 755.631 kb on + strand, within PP_0646 at 755.632 kb on - strand, within PP_0646 at 755.632 kb on - strand, within PP_0646 at 755.752 kb on + strand, within PP_0646 at 755.819 kb on + strand, within PP_0646 at 755.819 kb on + strand, within PP_0646 at 755.819 kb on + strand, within PP_0646 at 755.819 kb on + strand, within PP_0646 at 755.819 kb on + strand, within PP_0646 at 755.820 kb on - strand, within PP_0646 at 755.820 kb on - strand, within PP_0646 at 755.820 kb on - strand, within PP_0646 at 755.820 kb on - strand, within PP_0646 at 755.820 kb on - strand, within PP_0646 at 755.912 kb on - strand, within PP_0646 at 755.979 kb on - strand, within PP_0646 at 755.979 kb on - strand, within PP_0646 at 756.046 kb on - strand at 756.081 kb on - strand, within PP_0646 at 756.081 kb on - strand, within PP_0646 at 756.107 kb on - strand, within PP_0646 at 756.107 kb on - strand, within PP_0646 at 756.107 kb on - strand, within PP_0646 at 756.137 kb on - strand, within PP_0646
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH7 and (C) Trisodium citrate remove 753,915 + -3.2 753,915 + -0.6 753,915 + +0.9 753,941 - +0.8 753,959 + -0.1 753,959 + +0.3 753,959 + +0.7 754,210 - PP_0642 0.48 -1.1 754,229 + PP_0642 0.51 -0.3 754,432 + PP_0642 0.84 +0.2 754,432 + PP_0642 0.84 -0.4 754,432 + PP_0642 0.84 -0.7 754,433 - PP_0642 0.84 +0.7 754,664 + PP_0643 0.56 -1.0 754,664 + PP_0643 0.56 +0.9 754,665 - PP_0643 0.56 -1.7 754,856 + +1.1 754,857 - +0.6 754,857 - -0.5 754,947 + PP_0645 0.14 +1.0 754,947 + PP_0645 0.14 +1.0 754,948 - PP_0645 0.15 +0.6 754,948 - PP_0645 0.15 -3.5 755,009 + PP_0645 0.40 +0.6 755,009 + PP_0645 0.40 +0.6 755,010 - PP_0645 0.40 +0.1 755,010 - PP_0645 0.40 -1.2 755,040 + PP_0645 0.53 -0.7 755,041 - PP_0645 0.53 +0.8 755,064 + PP_0645 0.63 -0.9 755,104 + PP_0645 0.79 -0.9 755,105 - PP_0645 0.79 +0.1 755,105 - PP_0645 0.79 +0.1 755,105 - PP_0645 0.79 -2.7 755,123 + PP_0645 0.87 -0.6 755,123 + PP_0645 0.87 -0.4 755,123 + PP_0645 0.87 -0.7 755,124 - PP_0645 0.87 -3.2 755,196 + -0.2 755,197 - -1.9 755,197 - +1.0 755,197 - +0.8 755,197 - -0.5 755,197 - +1.6 755,197 - -0.5 755,201 + -1.9 755,201 + -4.5 755,232 - -2.1 755,266 - -1.9 755,266 - -0.1 755,281 - +0.1 755,281 - -0.9 755,291 + -0.1 755,291 + -3.8 755,292 - +0.2 755,297 + +0.7 755,298 - +0.3 755,298 - +0.6 755,298 - +1.9 755,359 + -0.6 755,359 + +1.6 755,359 + +0.2 755,359 + +0.3 755,359 + +0.0 755,359 + -1.7 755,360 - +1.8 755,360 - +0.4 755,360 - +0.5 755,360 - -0.4 755,366 + -1.8 755,366 + -1.9 755,367 - +0.3 755,382 + +0.3 755,382 + +1.3 755,382 + -2.6 755,439 + -1.5 755,439 + -2.5 755,439 + -0.5 755,440 - +0.5 755,440 - -1.0 755,631 + PP_0646 0.16 -0.5 755,631 + PP_0646 0.16 -2.0 755,631 + PP_0646 0.16 +0.1 755,631 + PP_0646 0.16 +1.3 755,632 - PP_0646 0.16 +1.0 755,632 - PP_0646 0.16 +1.0 755,752 + PP_0646 0.25 +1.3 755,819 + PP_0646 0.30 -2.4 755,819 + PP_0646 0.30 -3.7 755,819 + PP_0646 0.30 +0.1 755,819 + PP_0646 0.30 +1.9 755,819 + PP_0646 0.30 +0.3 755,820 - PP_0646 0.30 -0.8 755,820 - PP_0646 0.30 -0.2 755,820 - PP_0646 0.30 -1.5 755,820 - PP_0646 0.30 -1.1 755,820 - PP_0646 0.30 -1.5 755,912 - PP_0646 0.36 -0.5 755,979 - PP_0646 0.41 +1.2 755,979 - PP_0646 0.41 +2.0 756,046 - +1.4 756,081 - PP_0646 0.48 -1.6 756,081 - PP_0646 0.48 +0.1 756,107 - PP_0646 0.50 +0.5 756,107 - PP_0646 0.50 -0.4 756,107 - PP_0646 0.50 -2.9 756,137 - PP_0646 0.52 -1.6
Or see this region's nucleotide sequence