Strain Fitness in Pseudomonas putida KT2440 around PP_5617

Experiment: Growth at pH7 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5615 and PP_5616 are separated by 188 nucleotidesPP_5616 and PP_5617 are separated by 11 nucleotidesPP_5617 and PP_3688 are separated by 192 nucleotidesPP_3688 and PP_5618 are separated by 38 nucleotides PP_5615: PP_5615 - conserved protein of unknown function, at 4,193,648 to 4,193,959 _5615 PP_5616: PP_5616 - conserved protein of unknown function, at 4,194,148 to 4,194,552 _5616 PP_5617: PP_5617 - conserved protein of unknown function, at 4,194,564 to 4,194,782 _5617 PP_3688: PP_3688 - conserved protein of unknown function, at 4,194,975 to 4,195,673 _3688 PP_5618: PP_5618 - putative Cro/CI transcriptional regulator, at 4,195,712 to 4,196,158 _5618 Position (kb) 4194 4195Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4193.606 kb on + strandat 4193.606 kb on + strandat 4193.607 kb on - strandat 4193.636 kb on + strandat 4193.637 kb on - strandat 4193.637 kb on - strandat 4193.685 kb on + strandat 4193.685 kb on + strand, within PP_5615at 4193.685 kb on + strand, within PP_5615at 4193.686 kb on - strand, within PP_5615at 4193.686 kb on - strand, within PP_5615at 4193.703 kb on + strand, within PP_5615at 4193.703 kb on + strand, within PP_5615at 4193.703 kb on + strand, within PP_5615at 4193.703 kb on + strand, within PP_5615at 4193.703 kb on + strand, within PP_5615at 4193.703 kb on + strand, within PP_5615at 4193.704 kb on - strand, within PP_5615at 4193.754 kb on + strand, within PP_5615at 4193.755 kb on - strand, within PP_5615at 4193.776 kb on + strand, within PP_5615at 4193.776 kb on + strand, within PP_5615at 4193.776 kb on + strand, within PP_5615at 4193.776 kb on + strand, within PP_5615at 4193.777 kb on - strand, within PP_5615at 4193.777 kb on - strand, within PP_5615at 4193.777 kb on - strand, within PP_5615at 4193.777 kb on - strand, within PP_5615at 4193.777 kb on - strand, within PP_5615at 4193.844 kb on - strand, within PP_5615at 4193.905 kb on + strand, within PP_5615at 4193.933 kb on + strandat 4193.934 kb on - strandat 4193.934 kb on - strandat 4193.958 kb on - strandat 4194.054 kb on + strandat 4194.054 kb on + strandat 4194.054 kb on + strandat 4194.054 kb on + strandat 4194.055 kb on - strandat 4194.055 kb on - strandat 4194.115 kb on + strandat 4194.139 kb on + strandat 4194.150 kb on - strandat 4194.150 kb on - strandat 4194.242 kb on + strand, within PP_5616at 4194.256 kb on + strand, within PP_5616at 4194.257 kb on - strand, within PP_5616at 4194.310 kb on + strand, within PP_5616at 4194.312 kb on + strand, within PP_5616at 4194.312 kb on + strand, within PP_5616at 4194.312 kb on + strand, within PP_5616at 4194.313 kb on - strand, within PP_5616at 4194.313 kb on - strand, within PP_5616at 4194.313 kb on - strand, within PP_5616at 4194.332 kb on + strand, within PP_5616at 4194.457 kb on + strand, within PP_5616at 4194.457 kb on + strand, within PP_5616at 4194.457 kb on + strand, within PP_5616at 4194.457 kb on + strand, within PP_5616at 4194.457 kb on + strand, within PP_5616at 4194.499 kb on + strand, within PP_5616at 4194.499 kb on + strand, within PP_5616at 4194.499 kb on + strand, within PP_5616at 4194.500 kb on - strand, within PP_5616at 4194.566 kb on - strandat 4194.754 kb on + strand, within PP_5617at 4194.754 kb on + strand, within PP_5617at 4194.754 kb on + strand, within PP_5617at 4194.754 kb on + strand, within PP_5617at 4194.754 kb on + strand, within PP_5617at 4194.851 kb on - strandat 4194.909 kb on - strandat 4194.909 kb on - strandat 4194.918 kb on + strandat 4194.922 kb on + strandat 4194.922 kb on + strandat 4194.922 kb on + strandat 4194.922 kb on + strandat 4194.922 kb on + strandat 4194.923 kb on - strandat 4195.006 kb on - strandat 4195.056 kb on + strand, within PP_3688at 4195.056 kb on + strand, within PP_3688at 4195.057 kb on - strand, within PP_3688at 4195.258 kb on + strand, within PP_3688at 4195.439 kb on + strand, within PP_3688at 4195.452 kb on - strand, within PP_3688at 4195.481 kb on + strand, within PP_3688at 4195.487 kb on - strand, within PP_3688at 4195.532 kb on + strand, within PP_3688at 4195.532 kb on + strand, within PP_3688at 4195.532 kb on + strand, within PP_3688at 4195.533 kb on - strand, within PP_3688at 4195.533 kb on - strand, within PP_3688at 4195.533 kb on - strand, within PP_3688at 4195.533 kb on - strand, within PP_3688at 4195.533 kb on - strand, within PP_3688at 4195.535 kb on - strand, within PP_3688at 4195.560 kb on + strand, within PP_3688at 4195.560 kb on + strand, within PP_3688at 4195.561 kb on - strand, within PP_3688at 4195.561 kb on - strand, within PP_3688at 4195.561 kb on - strand, within PP_3688at 4195.580 kb on + strandat 4195.580 kb on + strand, within PP_3688at 4195.580 kb on + strand, within PP_3688at 4195.581 kb on - strand, within PP_3688at 4195.586 kb on - strand, within PP_3688at 4195.653 kb on - strandat 4195.711 kb on + strandat 4195.712 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH7 and (C) Trisodium citrate
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4,193,606 + +1.4
4,193,606 + -0.0
4,193,607 - +1.0
4,193,636 + -3.9
4,193,637 - +1.8
4,193,637 - -1.2
4,193,685 + +0.2
4,193,685 + PP_5615 0.12 -0.7
4,193,685 + PP_5615 0.12 +0.4
4,193,686 - PP_5615 0.12 +0.8
4,193,686 - PP_5615 0.12 -0.5
4,193,703 + PP_5615 0.18 +1.6
4,193,703 + PP_5615 0.18 -1.0
4,193,703 + PP_5615 0.18 -1.0
4,193,703 + PP_5615 0.18 +2.6
4,193,703 + PP_5615 0.18 +1.1
4,193,703 + PP_5615 0.18 +2.8
4,193,704 - PP_5615 0.18 +0.8
4,193,754 + PP_5615 0.34 +1.7
4,193,755 - PP_5615 0.34 -3.2
4,193,776 + PP_5615 0.41 -0.1
4,193,776 + PP_5615 0.41 -2.2
4,193,776 + PP_5615 0.41 +1.2
4,193,776 + PP_5615 0.41 +0.7
4,193,777 - PP_5615 0.41 +1.2
4,193,777 - PP_5615 0.41 +0.1
4,193,777 - PP_5615 0.41 +0.3
4,193,777 - PP_5615 0.41 +0.2
4,193,777 - PP_5615 0.41 +0.2
4,193,844 - PP_5615 0.63 +1.7
4,193,905 + PP_5615 0.82 -1.1
4,193,933 + -3.8
4,193,934 - +0.8
4,193,934 - +0.1
4,193,958 - -0.6
4,194,054 + -3.1
4,194,054 + +1.9
4,194,054 + -0.7
4,194,054 + -2.8
4,194,055 - +0.6
4,194,055 - +0.6
4,194,115 + -3.5
4,194,139 + -2.3
4,194,150 - +0.1
4,194,150 - +0.6
4,194,242 + PP_5616 0.23 -0.8
4,194,256 + PP_5616 0.27 -0.2
4,194,257 - PP_5616 0.27 -2.0
4,194,310 + PP_5616 0.40 +0.6
4,194,312 + PP_5616 0.40 +0.1
4,194,312 + PP_5616 0.40 +0.5
4,194,312 + PP_5616 0.40 +1.2
4,194,313 - PP_5616 0.41 +2.0
4,194,313 - PP_5616 0.41 -2.8
4,194,313 - PP_5616 0.41 -1.7
4,194,332 + PP_5616 0.45 -1.2
4,194,457 + PP_5616 0.76 +0.6
4,194,457 + PP_5616 0.76 -0.5
4,194,457 + PP_5616 0.76 -3.4
4,194,457 + PP_5616 0.76 -0.1
4,194,457 + PP_5616 0.76 -2.5
4,194,499 + PP_5616 0.87 -0.0
4,194,499 + PP_5616 0.87 -0.7
4,194,499 + PP_5616 0.87 -2.4
4,194,500 - PP_5616 0.87 -0.2
4,194,566 - -0.9
4,194,754 + PP_5617 0.87 +0.4
4,194,754 + PP_5617 0.87 +1.2
4,194,754 + PP_5617 0.87 +1.0
4,194,754 + PP_5617 0.87 +0.8
4,194,754 + PP_5617 0.87 +1.6
4,194,851 - -3.4
4,194,909 - -0.8
4,194,909 - -3.8
4,194,918 + -0.2
4,194,922 + +1.3
4,194,922 + +0.7
4,194,922 + +0.1
4,194,922 + +0.7
4,194,922 + -1.0
4,194,923 - +0.6
4,195,006 - -2.0
4,195,056 + PP_3688 0.12 +0.2
4,195,056 + PP_3688 0.12 -1.8
4,195,057 - PP_3688 0.12 +1.5
4,195,258 + PP_3688 0.40 +1.2
4,195,439 + PP_3688 0.66 -0.9
4,195,452 - PP_3688 0.68 -0.2
4,195,481 + PP_3688 0.72 +1.0
4,195,487 - PP_3688 0.73 -2.9
4,195,532 + PP_3688 0.80 +0.2
4,195,532 + PP_3688 0.80 -1.2
4,195,532 + PP_3688 0.80 -1.9
4,195,533 - PP_3688 0.80 +0.8
4,195,533 - PP_3688 0.80 -3.2
4,195,533 - PP_3688 0.80 -0.0
4,195,533 - PP_3688 0.80 +0.6
4,195,533 - PP_3688 0.80 -0.0
4,195,535 - PP_3688 0.80 -4.0
4,195,560 + PP_3688 0.84 -0.6
4,195,560 + PP_3688 0.84 +1.4
4,195,561 - PP_3688 0.84 +1.4
4,195,561 - PP_3688 0.84 -1.7
4,195,561 - PP_3688 0.84 +1.4
4,195,580 + +2.5
4,195,580 + PP_3688 0.87 +1.0
4,195,580 + PP_3688 0.87 -1.3
4,195,581 - PP_3688 0.87 -1.5
4,195,586 - PP_3688 0.87 +0.4
4,195,653 - -3.6
4,195,711 + -0.3
4,195,712 - -0.1

Or see this region's nucleotide sequence