Strain Fitness in Pseudomonas putida KT2440 around PP_5462

Experiment: Growth at pH7 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1114 and PP_1115 are separated by 7 nucleotidesPP_1115 and PP_5462 are separated by 481 nucleotidesPP_5462 and PP_5463 are separated by 311 nucleotides PP_1114: PP_1114 - SEC-C domain protein, at 1,273,377 to 1,273,574 _1114 PP_1115: PP_1115 - putative Lipoprotein, at 1,273,582 to 1,274,085 _1115 PP_5462: PP_5462 - conserved protein of unknown function, at 1,274,567 to 1,274,803 _5462 PP_5463: PP_5463 - conserved protein of unknown function, at 1,275,115 to 1,275,675 _5463 Position (kb) 1274 1275Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1273.591 kb on + strandat 1273.595 kb on + strandat 1273.596 kb on - strandat 1273.596 kb on - strandat 1273.596 kb on - strandat 1273.610 kb on - strandat 1273.683 kb on - strand, within PP_1115at 1273.799 kb on - strand, within PP_1115at 1273.822 kb on + strand, within PP_1115at 1273.823 kb on - strand, within PP_1115at 1273.840 kb on + strand, within PP_1115at 1273.840 kb on + strand, within PP_1115at 1273.840 kb on + strand, within PP_1115at 1273.840 kb on + strand, within PP_1115at 1273.840 kb on + strand, within PP_1115at 1273.841 kb on - strand, within PP_1115at 1273.847 kb on + strand, within PP_1115at 1273.847 kb on + strand, within PP_1115at 1273.847 kb on + strand, within PP_1115at 1273.847 kb on + strand, within PP_1115at 1273.847 kb on + strand, within PP_1115at 1273.847 kb on + strand, within PP_1115at 1273.848 kb on - strand, within PP_1115at 1273.848 kb on - strand, within PP_1115at 1274.033 kb on - strand, within PP_1115at 1274.071 kb on + strandat 1274.130 kb on + strandat 1274.131 kb on - strandat 1274.158 kb on + strandat 1274.164 kb on + strandat 1274.164 kb on + strandat 1274.164 kb on + strandat 1274.164 kb on + strandat 1274.165 kb on - strandat 1274.181 kb on + strandat 1274.181 kb on + strandat 1274.201 kb on + strandat 1274.202 kb on - strandat 1274.243 kb on - strandat 1274.250 kb on - strandat 1274.250 kb on - strandat 1274.250 kb on - strandat 1274.250 kb on - strandat 1274.320 kb on + strandat 1274.321 kb on - strandat 1274.321 kb on - strandat 1274.349 kb on - strandat 1274.349 kb on - strandat 1274.378 kb on + strandat 1274.379 kb on - strandat 1274.402 kb on - strandat 1274.443 kb on + strandat 1274.470 kb on + strandat 1274.534 kb on - strandat 1274.549 kb on + strandat 1274.549 kb on + strandat 1274.591 kb on + strand, within PP_5462at 1274.591 kb on + strand, within PP_5462at 1274.591 kb on + strandat 1274.592 kb on - strand, within PP_5462at 1274.592 kb on - strand, within PP_5462at 1274.592 kb on - strand, within PP_5462at 1274.627 kb on + strand, within PP_5462at 1274.628 kb on - strand, within PP_5462at 1274.697 kb on + strand, within PP_5462at 1274.730 kb on + strand, within PP_5462at 1274.730 kb on + strand, within PP_5462at 1274.731 kb on - strand, within PP_5462at 1274.731 kb on - strand, within PP_5462at 1274.731 kb on - strand, within PP_5462at 1274.737 kb on + strand, within PP_5462at 1274.737 kb on + strand, within PP_5462at 1274.737 kb on + strand, within PP_5462at 1274.738 kb on - strand, within PP_5462at 1274.738 kb on - strand, within PP_5462at 1274.738 kb on - strand, within PP_5462at 1274.765 kb on + strand, within PP_5462at 1274.828 kb on + strandat 1274.828 kb on + strandat 1274.829 kb on - strandat 1274.829 kb on - strandat 1274.829 kb on - strandat 1274.832 kb on + strandat 1274.833 kb on - strandat 1274.833 kb on - strandat 1274.833 kb on - strandat 1274.835 kb on + strandat 1274.835 kb on + strandat 1274.836 kb on - strandat 1274.844 kb on + strandat 1274.844 kb on + strandat 1274.844 kb on + strandat 1274.845 kb on - strandat 1274.845 kb on - strandat 1274.960 kb on + strandat 1275.013 kb on + strandat 1275.014 kb on - strandat 1275.031 kb on + strandat 1275.052 kb on + strandat 1275.052 kb on + strandat 1275.052 kb on + strandat 1275.052 kb on + strandat 1275.053 kb on - strandat 1275.116 kb on + strandat 1275.117 kb on - strandat 1275.121 kb on + strandat 1275.122 kb on - strandat 1275.124 kb on + strandat 1275.124 kb on + strandat 1275.218 kb on + strand, within PP_5463at 1275.242 kb on + strand, within PP_5463at 1275.243 kb on - strand, within PP_5463at 1275.250 kb on + strand, within PP_5463at 1275.251 kb on - strand, within PP_5463at 1275.265 kb on + strand, within PP_5463at 1275.265 kb on + strand, within PP_5463at 1275.266 kb on - strand, within PP_5463at 1275.266 kb on - strand, within PP_5463at 1275.266 kb on - strand, within PP_5463at 1275.267 kb on + strand, within PP_5463at 1275.268 kb on - strand, within PP_5463at 1275.268 kb on - strand, within PP_5463at 1275.305 kb on - strand, within PP_5463at 1275.310 kb on + strand, within PP_5463at 1275.310 kb on + strand, within PP_5463at 1275.311 kb on - strand, within PP_5463at 1275.358 kb on + strand, within PP_5463at 1275.358 kb on + strand, within PP_5463at 1275.359 kb on - strand, within PP_5463at 1275.359 kb on - strandat 1275.423 kb on - strand, within PP_5463at 1275.427 kb on - strand, within PP_5463at 1275.427 kb on - strand, within PP_5463at 1275.462 kb on + strand, within PP_5463at 1275.463 kb on - strand, within PP_5463at 1275.471 kb on - strand, within PP_5463at 1275.474 kb on + strand, within PP_5463at 1275.474 kb on + strand, within PP_5463at 1275.498 kb on - strand, within PP_5463at 1275.498 kb on - strand, within PP_5463at 1275.501 kb on + strand, within PP_5463at 1275.502 kb on - strand, within PP_5463at 1275.516 kb on + strand, within PP_5463at 1275.560 kb on - strand, within PP_5463at 1275.597 kb on + strand, within PP_5463at 1275.597 kb on + strand, within PP_5463at 1275.598 kb on - strand, within PP_5463at 1275.598 kb on - strand, within PP_5463at 1275.626 kb on + strandat 1275.703 kb on + strandat 1275.703 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH7 and (C) Trisodium citrate
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1,273,591 + +0.6
1,273,595 + -1.6
1,273,596 - +2.1
1,273,596 - -0.3
1,273,596 - -0.1
1,273,610 - +1.0
1,273,683 - PP_1115 0.20 +0.2
1,273,799 - PP_1115 0.43 -2.1
1,273,822 + PP_1115 0.48 +0.2
1,273,823 - PP_1115 0.48 +0.1
1,273,840 + PP_1115 0.51 -0.7
1,273,840 + PP_1115 0.51 -2.7
1,273,840 + PP_1115 0.51 +0.5
1,273,840 + PP_1115 0.51 -0.3
1,273,840 + PP_1115 0.51 +0.7
1,273,841 - PP_1115 0.51 -3.7
1,273,847 + PP_1115 0.53 -1.0
1,273,847 + PP_1115 0.53 +2.0
1,273,847 + PP_1115 0.53 +1.1
1,273,847 + PP_1115 0.53 +0.5
1,273,847 + PP_1115 0.53 +0.4
1,273,847 + PP_1115 0.53 -0.2
1,273,848 - PP_1115 0.53 -0.4
1,273,848 - PP_1115 0.53 -3.8
1,274,033 - PP_1115 0.89 -0.9
1,274,071 + +0.3
1,274,130 + -1.5
1,274,131 - +0.1
1,274,158 + -1.2
1,274,164 + +1.2
1,274,164 + -3.6
1,274,164 + -1.4
1,274,164 + -1.8
1,274,165 - +0.5
1,274,181 + +2.3
1,274,181 + -3.1
1,274,201 + -2.8
1,274,202 - +0.2
1,274,243 - +1.0
1,274,250 - +0.0
1,274,250 - -0.0
1,274,250 - -0.6
1,274,250 - +1.9
1,274,320 + -3.6
1,274,321 - +2.8
1,274,321 - +0.5
1,274,349 - +2.3
1,274,349 - -1.6
1,274,378 + -3.0
1,274,379 - -0.3
1,274,402 - -2.7
1,274,443 + -1.3
1,274,470 + -2.1
1,274,534 - +0.3
1,274,549 + -0.8
1,274,549 + -0.2
1,274,591 + PP_5462 0.10 -0.2
1,274,591 + PP_5462 0.10 -0.7
1,274,591 + -0.5
1,274,592 - PP_5462 0.11 +1.1
1,274,592 - PP_5462 0.11 -3.3
1,274,592 - PP_5462 0.11 -3.2
1,274,627 + PP_5462 0.25 -2.9
1,274,628 - PP_5462 0.26 -2.5
1,274,697 + PP_5462 0.55 +1.1
1,274,730 + PP_5462 0.69 +0.4
1,274,730 + PP_5462 0.69 -1.9
1,274,731 - PP_5462 0.69 +0.5
1,274,731 - PP_5462 0.69 -1.4
1,274,731 - PP_5462 0.69 -3.2
1,274,737 + PP_5462 0.72 -2.1
1,274,737 + PP_5462 0.72 -3.3
1,274,737 + PP_5462 0.72 +0.6
1,274,738 - PP_5462 0.72 -2.2
1,274,738 - PP_5462 0.72 +0.1
1,274,738 - PP_5462 0.72 -3.3
1,274,765 + PP_5462 0.84 +1.6
1,274,828 + +0.4
1,274,828 + -2.7
1,274,829 - -0.2
1,274,829 - +0.8
1,274,829 - -2.5
1,274,832 + +2.6
1,274,833 - +1.9
1,274,833 - +0.1
1,274,833 - -2.5
1,274,835 + +0.8
1,274,835 + -0.4
1,274,836 - +0.4
1,274,844 + +1.6
1,274,844 + +0.8
1,274,844 + +1.8
1,274,845 - -0.7
1,274,845 - -4.1
1,274,960 + -2.6
1,275,013 + +0.0
1,275,014 - -1.1
1,275,031 + +0.5
1,275,052 + +1.5
1,275,052 + +1.3
1,275,052 + +0.8
1,275,052 + +0.7
1,275,053 - -0.5
1,275,116 + +0.9
1,275,117 - -0.4
1,275,121 + +1.0
1,275,122 - -0.5
1,275,124 + +1.6
1,275,124 + +1.1
1,275,218 + PP_5463 0.18 +0.5
1,275,242 + PP_5463 0.23 -2.7
1,275,243 - PP_5463 0.23 +1.4
1,275,250 + PP_5463 0.24 +1.0
1,275,251 - PP_5463 0.24 -0.8
1,275,265 + PP_5463 0.27 -1.5
1,275,265 + PP_5463 0.27 +1.1
1,275,266 - PP_5463 0.27 -3.1
1,275,266 - PP_5463 0.27 +0.8
1,275,266 - PP_5463 0.27 +0.8
1,275,267 + PP_5463 0.27 +2.3
1,275,268 - PP_5463 0.27 -0.3
1,275,268 - PP_5463 0.27 +0.1
1,275,305 - PP_5463 0.34 +2.5
1,275,310 + PP_5463 0.35 -3.4
1,275,310 + PP_5463 0.35 -3.7
1,275,311 - PP_5463 0.35 -0.8
1,275,358 + PP_5463 0.43 +0.5
1,275,358 + PP_5463 0.43 +0.3
1,275,359 - PP_5463 0.43 -2.4
1,275,359 - -0.4
1,275,423 - PP_5463 0.55 -0.3
1,275,427 - PP_5463 0.56 +0.9
1,275,427 - PP_5463 0.56 -2.9
1,275,462 + PP_5463 0.62 -2.7
1,275,463 - PP_5463 0.62 +0.2
1,275,471 - PP_5463 0.63 +0.9
1,275,474 + PP_5463 0.64 +0.8
1,275,474 + PP_5463 0.64 +1.7
1,275,498 - PP_5463 0.68 +2.5
1,275,498 - PP_5463 0.68 -0.4
1,275,501 + PP_5463 0.69 -2.9
1,275,502 - PP_5463 0.69 +1.5
1,275,516 + PP_5463 0.71 +1.6
1,275,560 - PP_5463 0.79 -1.6
1,275,597 + PP_5463 0.86 +0.6
1,275,597 + PP_5463 0.86 +0.1
1,275,598 - PP_5463 0.86 -3.1
1,275,598 - PP_5463 0.86 -1.8
1,275,626 + +1.1
1,275,703 + +0.1
1,275,703 + +1.3

Or see this region's nucleotide sequence