Experiment: Growth at pH7 and (C) Trisodium citrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3932 and PP_3933 are separated by 1 nucleotides PP_3933 and PP_3934 are separated by 62 nucleotides
PP_3932: PP_3932 - Diguanylate cyclase, at 4,436,841 to 4,438,265
_3932
PP_3933: PP_3933 - conserved membrane protein of unknown function, at 4,438,267 to 4,439,028
_3933
PP_3934: PP_3934 - Transcriptional regulator, LysR family, at 4,439,091 to 4,440,032
_3934
Position (kb) 4438
4439
4440 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4437.363 kb on - strand, within PP_3932 at 4437.363 kb on - strand, within PP_3932 at 4437.430 kb on + strand, within PP_3932 at 4437.430 kb on + strand, within PP_3932 at 4437.522 kb on + strand, within PP_3932 at 4437.522 kb on + strand, within PP_3932 at 4437.522 kb on + strand, within PP_3932 at 4437.522 kb on + strand, within PP_3932 at 4437.523 kb on - strand, within PP_3932 at 4437.566 kb on + strand, within PP_3932 at 4437.566 kb on + strand, within PP_3932 at 4437.566 kb on + strand, within PP_3932 at 4437.567 kb on - strand, within PP_3932 at 4437.633 kb on - strand, within PP_3932 at 4437.717 kb on - strand, within PP_3932 at 4438.122 kb on - strand, within PP_3932 at 4438.200 kb on + strand at 4438.201 kb on - strand at 4438.417 kb on + strand, within PP_3933 at 4438.418 kb on - strand, within PP_3933 at 4438.425 kb on - strand, within PP_3933 at 4438.558 kb on - strand, within PP_3933 at 4438.586 kb on + strand, within PP_3933 at 4438.586 kb on + strand, within PP_3933 at 4438.586 kb on + strand, within PP_3933 at 4438.587 kb on - strand, within PP_3933 at 4438.587 kb on - strand, within PP_3933 at 4438.587 kb on - strand, within PP_3933 at 4438.688 kb on + strand, within PP_3933 at 4438.689 kb on - strand, within PP_3933 at 4438.834 kb on - strand, within PP_3933 at 4439.019 kb on + strand at 4439.232 kb on - strand, within PP_3934 at 4439.512 kb on - strand, within PP_3934 at 4439.543 kb on + strand, within PP_3934 at 4439.543 kb on + strand, within PP_3934 at 4439.628 kb on + strand, within PP_3934 at 4439.628 kb on + strand, within PP_3934 at 4439.629 kb on - strand, within PP_3934 at 4439.643 kb on + strand, within PP_3934 at 4439.643 kb on + strand, within PP_3934 at 4439.643 kb on + strand, within PP_3934 at 4439.644 kb on - strand, within PP_3934 at 4439.956 kb on + strand at 4439.956 kb on + strand at 4439.957 kb on - strand at 4439.957 kb on - strand at 4439.957 kb on - strand at 4439.957 kb on - strand at 4439.957 kb on - strand at 4439.957 kb on - strand at 4439.957 kb on - strand at 4439.957 kb on - strand at 4439.958 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH7 and (C) Trisodium citrate remove 4,437,363 - PP_3932 0.37 +2.5 4,437,363 - PP_3932 0.37 -0.8 4,437,430 + PP_3932 0.41 -0.2 4,437,430 + PP_3932 0.41 -2.7 4,437,522 + PP_3932 0.48 +0.9 4,437,522 + PP_3932 0.48 +1.8 4,437,522 + PP_3932 0.48 -2.5 4,437,522 + PP_3932 0.48 +0.9 4,437,523 - PP_3932 0.48 -3.3 4,437,566 + PP_3932 0.51 -1.8 4,437,566 + PP_3932 0.51 +1.6 4,437,566 + PP_3932 0.51 -0.1 4,437,567 - PP_3932 0.51 -0.5 4,437,633 - PP_3932 0.56 -0.4 4,437,717 - PP_3932 0.61 +0.8 4,438,122 - PP_3932 0.90 -3.3 4,438,200 + +0.3 4,438,201 - +1.1 4,438,417 + PP_3933 0.20 -2.9 4,438,418 - PP_3933 0.20 -2.5 4,438,425 - PP_3933 0.21 +0.5 4,438,558 - PP_3933 0.38 -0.7 4,438,586 + PP_3933 0.42 -3.4 4,438,586 + PP_3933 0.42 +1.1 4,438,586 + PP_3933 0.42 -3.1 4,438,587 - PP_3933 0.42 -2.4 4,438,587 - PP_3933 0.42 +0.1 4,438,587 - PP_3933 0.42 +1.1 4,438,688 + PP_3933 0.55 -3.6 4,438,689 - PP_3933 0.55 +1.1 4,438,834 - PP_3933 0.74 -3.4 4,439,019 + -0.2 4,439,232 - PP_3934 0.15 +0.3 4,439,512 - PP_3934 0.45 -1.5 4,439,543 + PP_3934 0.48 +0.6 4,439,543 + PP_3934 0.48 -0.4 4,439,628 + PP_3934 0.57 -3.0 4,439,628 + PP_3934 0.57 -1.0 4,439,629 - PP_3934 0.57 +1.0 4,439,643 + PP_3934 0.59 -0.5 4,439,643 + PP_3934 0.59 +0.5 4,439,643 + PP_3934 0.59 -1.4 4,439,644 - PP_3934 0.59 +0.2 4,439,956 + +0.9 4,439,956 + +0.5 4,439,957 - -0.2 4,439,957 - +1.0 4,439,957 - -2.2 4,439,957 - -2.7 4,439,957 - -2.8 4,439,957 - +0.2 4,439,957 - +0.5 4,439,957 - -4.5 4,439,958 + -3.4
Or see this region's nucleotide sequence