Strain Fitness in Pseudomonas putida KT2440 around PP_2871

Experiment: Growth at pH7 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2870 and PP_2871 are separated by 22 nucleotidesPP_2871 and PP_2872 are separated by 162 nucleotides PP_2870: PP_2870 - putative spermidine/putrescine-binding periplasmic protein, at 3,272,259 to 3,273,302 _2870 PP_2871: PP_2871 - Class II aldolase/adducin domain protein, at 3,273,325 to 3,274,080 _2871 PP_2872: PP_2872 - O-acetylserine/cysteine export transporter, at 3,274,243 to 3,275,127 _2872 Position (kb) 3273 3274 3275Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3272.443 kb on - strand, within PP_2870at 3272.443 kb on - strand, within PP_2870at 3272.443 kb on - strand, within PP_2870at 3272.554 kb on - strand, within PP_2870at 3272.554 kb on - strand, within PP_2870at 3272.658 kb on + strand, within PP_2870at 3272.659 kb on - strand, within PP_2870at 3272.757 kb on + strand, within PP_2870at 3272.757 kb on + strand, within PP_2870at 3272.806 kb on + strand, within PP_2870at 3272.806 kb on + strand, within PP_2870at 3272.807 kb on - strand, within PP_2870at 3272.807 kb on - strand, within PP_2870at 3272.807 kb on - strand, within PP_2870at 3272.807 kb on - strand, within PP_2870at 3272.807 kb on - strand, within PP_2870at 3272.807 kb on - strand, within PP_2870at 3272.816 kb on - strand, within PP_2870at 3272.949 kb on + strand, within PP_2870at 3272.950 kb on - strand, within PP_2870at 3273.001 kb on + strand, within PP_2870at 3273.002 kb on - strand, within PP_2870at 3273.018 kb on + strand, within PP_2870at 3273.019 kb on - strand, within PP_2870at 3273.019 kb on - strand, within PP_2870at 3273.087 kb on + strand, within PP_2870at 3273.088 kb on - strand, within PP_2870at 3273.117 kb on + strand, within PP_2870at 3273.131 kb on - strand, within PP_2870at 3273.136 kb on - strand, within PP_2870at 3273.149 kb on + strand, within PP_2870at 3273.300 kb on + strandat 3273.301 kb on - strandat 3273.301 kb on - strandat 3273.342 kb on - strandat 3273.342 kb on - strandat 3273.342 kb on - strandat 3273.342 kb on - strandat 3273.417 kb on + strand, within PP_2871at 3273.418 kb on - strand, within PP_2871at 3273.418 kb on - strand, within PP_2871at 3273.418 kb on - strand, within PP_2871at 3273.418 kb on - strand, within PP_2871at 3273.719 kb on - strand, within PP_2871at 3273.862 kb on + strand, within PP_2871at 3273.862 kb on + strand, within PP_2871at 3273.862 kb on + strand, within PP_2871at 3273.862 kb on + strand, within PP_2871at 3273.862 kb on + strand, within PP_2871at 3273.863 kb on - strand, within PP_2871at 3273.863 kb on - strand, within PP_2871at 3273.863 kb on - strand, within PP_2871at 3273.865 kb on + strand, within PP_2871at 3273.865 kb on + strand, within PP_2871at 3273.866 kb on - strand, within PP_2871at 3273.866 kb on - strand, within PP_2871at 3273.866 kb on - strand, within PP_2871at 3273.920 kb on + strand, within PP_2871at 3273.920 kb on + strand, within PP_2871at 3273.920 kb on + strand, within PP_2871at 3273.921 kb on - strand, within PP_2871at 3273.921 kb on - strand, within PP_2871at 3274.069 kb on + strandat 3274.105 kb on + strandat 3274.106 kb on - strandat 3274.106 kb on - strandat 3274.146 kb on - strandat 3274.483 kb on + strand, within PP_2872at 3274.483 kb on + strand, within PP_2872at 3274.483 kb on + strand, within PP_2872at 3274.483 kb on + strand, within PP_2872at 3274.483 kb on + strand, within PP_2872at 3274.484 kb on - strand, within PP_2872at 3274.484 kb on - strand, within PP_2872at 3274.484 kb on - strand, within PP_2872at 3274.720 kb on - strand, within PP_2872at 3274.848 kb on + strand, within PP_2872at 3274.848 kb on + strand, within PP_2872at 3274.849 kb on - strand, within PP_2872at 3274.849 kb on - strand, within PP_2872at 3274.879 kb on + strand, within PP_2872at 3274.879 kb on + strand, within PP_2872at 3274.880 kb on - strand, within PP_2872at 3274.880 kb on - strand, within PP_2872

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH7 and (C) Trisodium citrate
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3,272,443 - PP_2870 0.18 +0.3
3,272,443 - PP_2870 0.18 +0.8
3,272,443 - PP_2870 0.18 +0.9
3,272,554 - PP_2870 0.28 +0.0
3,272,554 - PP_2870 0.28 +0.7
3,272,658 + PP_2870 0.38 -0.9
3,272,659 - PP_2870 0.38 +1.7
3,272,757 + PP_2870 0.48 +1.6
3,272,757 + PP_2870 0.48 +1.3
3,272,806 + PP_2870 0.52 +0.2
3,272,806 + PP_2870 0.52 +2.1
3,272,807 - PP_2870 0.52 +0.1
3,272,807 - PP_2870 0.52 +0.7
3,272,807 - PP_2870 0.52 -2.9
3,272,807 - PP_2870 0.52 +0.8
3,272,807 - PP_2870 0.52 +1.4
3,272,807 - PP_2870 0.52 -0.2
3,272,816 - PP_2870 0.53 -0.7
3,272,949 + PP_2870 0.66 +0.1
3,272,950 - PP_2870 0.66 -1.6
3,273,001 + PP_2870 0.71 -0.4
3,273,002 - PP_2870 0.71 +0.8
3,273,018 + PP_2870 0.73 -0.2
3,273,019 - PP_2870 0.73 -0.9
3,273,019 - PP_2870 0.73 +2.1
3,273,087 + PP_2870 0.79 +2.2
3,273,088 - PP_2870 0.79 -4.1
3,273,117 + PP_2870 0.82 +3.3
3,273,131 - PP_2870 0.84 -2.7
3,273,136 - PP_2870 0.84 +1.6
3,273,149 + PP_2870 0.85 +1.3
3,273,300 + -2.1
3,273,301 - +0.2
3,273,301 - -1.7
3,273,342 - -3.3
3,273,342 - +0.8
3,273,342 - -2.5
3,273,342 - -0.4
3,273,417 + PP_2871 0.12 +0.9
3,273,418 - PP_2871 0.12 -0.8
3,273,418 - PP_2871 0.12 -3.6
3,273,418 - PP_2871 0.12 +0.1
3,273,418 - PP_2871 0.12 +1.2
3,273,719 - PP_2871 0.52 -3.4
3,273,862 + PP_2871 0.71 -3.9
3,273,862 + PP_2871 0.71 +1.7
3,273,862 + PP_2871 0.71 +1.2
3,273,862 + PP_2871 0.71 +1.9
3,273,862 + PP_2871 0.71 +1.4
3,273,863 - PP_2871 0.71 +1.0
3,273,863 - PP_2871 0.71 +0.6
3,273,863 - PP_2871 0.71 +1.7
3,273,865 + PP_2871 0.71 -1.3
3,273,865 + PP_2871 0.71 +0.4
3,273,866 - PP_2871 0.72 +1.2
3,273,866 - PP_2871 0.72 -4.1
3,273,866 - PP_2871 0.72 +1.8
3,273,920 + PP_2871 0.79 +1.2
3,273,920 + PP_2871 0.79 -1.2
3,273,920 + PP_2871 0.79 -3.0
3,273,921 - PP_2871 0.79 +0.1
3,273,921 - PP_2871 0.79 -0.9
3,274,069 + +0.1
3,274,105 + +1.1
3,274,106 - +2.8
3,274,106 - -0.3
3,274,146 - -0.1
3,274,483 + PP_2872 0.27 +0.2
3,274,483 + PP_2872 0.27 -3.1
3,274,483 + PP_2872 0.27 -2.9
3,274,483 + PP_2872 0.27 +0.8
3,274,483 + PP_2872 0.27 -0.4
3,274,484 - PP_2872 0.27 -0.1
3,274,484 - PP_2872 0.27 -0.2
3,274,484 - PP_2872 0.27 +0.1
3,274,720 - PP_2872 0.54 +0.1
3,274,848 + PP_2872 0.68 -0.7
3,274,848 + PP_2872 0.68 -2.1
3,274,849 - PP_2872 0.68 -3.4
3,274,849 - PP_2872 0.68 +0.7
3,274,879 + PP_2872 0.72 -0.2
3,274,879 + PP_2872 0.72 +0.9
3,274,880 - PP_2872 0.72 +0.5
3,274,880 - PP_2872 0.72 +0.1

Or see this region's nucleotide sequence