Strain Fitness in Pseudomonas putida KT2440 around PP_1516

Experiment: Growth at pH7 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1515 and PP_1516 are separated by 250 nucleotidesPP_1516 and PP_1517 are separated by 6 nucleotides PP_1515: PP_1515 - Transcriptional regulator, tetR family, at 1,719,369 to 1,720,010 _1515 PP_1516: PP_1516 - RND membrane fusion protein, at 1,720,261 to 1,721,361 _1516 PP_1517: PP_1517 - RND efflux transporter, at 1,721,368 to 1,724,433 _1517 Position (kb) 1720 1721 1722Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1719.262 kb on + strandat 1719.263 kb on - strandat 1719.271 kb on + strandat 1719.271 kb on + strandat 1719.272 kb on - strandat 1719.272 kb on - strandat 1719.292 kb on + strandat 1719.293 kb on - strandat 1719.293 kb on - strandat 1719.354 kb on + strandat 1719.355 kb on - strandat 1719.355 kb on - strandat 1719.387 kb on + strandat 1719.388 kb on - strandat 1719.388 kb on - strandat 1719.399 kb on + strandat 1719.399 kb on + strandat 1719.399 kb on + strandat 1719.399 kb on + strandat 1719.564 kb on + strand, within PP_1515at 1719.607 kb on + strand, within PP_1515at 1719.608 kb on - strand, within PP_1515at 1719.614 kb on - strand, within PP_1515at 1719.614 kb on - strand, within PP_1515at 1719.690 kb on - strand, within PP_1515at 1719.690 kb on - strand, within PP_1515at 1719.690 kb on - strand, within PP_1515at 1719.751 kb on + strand, within PP_1515at 1719.838 kb on + strand, within PP_1515at 1720.062 kb on - strandat 1720.073 kb on - strandat 1720.209 kb on - strandat 1720.214 kb on - strandat 1720.230 kb on - strandat 1720.232 kb on + strandat 1720.232 kb on + strandat 1720.405 kb on + strand, within PP_1516at 1720.624 kb on + strand, within PP_1516at 1720.666 kb on + strand, within PP_1516at 1720.667 kb on - strand, within PP_1516at 1720.733 kb on - strand, within PP_1516at 1720.757 kb on - strand, within PP_1516at 1720.763 kb on + strand, within PP_1516at 1721.215 kb on + strand, within PP_1516at 1721.216 kb on - strand, within PP_1516at 1721.288 kb on + strandat 1721.310 kb on - strandat 1721.336 kb on + strandat 1721.337 kb on - strandat 1721.337 kb on - strandat 1721.359 kb on + strandat 1721.603 kb on - strandat 1721.796 kb on + strand, within PP_1517at 1721.796 kb on + strand, within PP_1517at 1721.796 kb on + strand, within PP_1517at 1721.796 kb on + strand, within PP_1517at 1721.796 kb on + strand, within PP_1517at 1721.797 kb on - strand, within PP_1517at 1721.800 kb on + strand, within PP_1517at 1721.800 kb on + strand, within PP_1517at 1721.800 kb on + strand, within PP_1517at 1721.800 kb on + strand, within PP_1517at 1721.800 kb on + strand, within PP_1517at 1721.800 kb on + strand, within PP_1517at 1721.827 kb on + strand, within PP_1517at 1721.845 kb on + strand, within PP_1517at 1721.846 kb on - strand, within PP_1517at 1721.857 kb on - strand, within PP_1517at 1722.300 kb on + strand, within PP_1517at 1722.300 kb on + strand, within PP_1517at 1722.300 kb on + strand, within PP_1517at 1722.301 kb on - strand, within PP_1517at 1722.301 kb on - strand, within PP_1517

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH7 and (C) Trisodium citrate
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1,719,262 + +1.3
1,719,263 - +1.0
1,719,271 + +0.2
1,719,271 + -0.9
1,719,272 - +1.3
1,719,272 - +1.5
1,719,292 + -0.6
1,719,293 - +2.3
1,719,293 - +0.2
1,719,354 + +0.4
1,719,355 - +0.2
1,719,355 - -1.8
1,719,387 + +1.8
1,719,388 - -0.5
1,719,388 - -0.9
1,719,399 + -0.1
1,719,399 + -3.3
1,719,399 + +0.9
1,719,399 + -1.4
1,719,564 + PP_1515 0.30 +2.0
1,719,607 + PP_1515 0.37 +0.9
1,719,608 - PP_1515 0.37 -1.3
1,719,614 - PP_1515 0.38 -3.3
1,719,614 - PP_1515 0.38 -1.2
1,719,690 - PP_1515 0.50 +0.6
1,719,690 - PP_1515 0.50 -1.1
1,719,690 - PP_1515 0.50 -0.9
1,719,751 + PP_1515 0.60 -3.5
1,719,838 + PP_1515 0.73 +0.6
1,720,062 - -3.0
1,720,073 - -2.4
1,720,209 - -0.5
1,720,214 - -0.9
1,720,230 - -0.1
1,720,232 + +0.8
1,720,232 + +1.3
1,720,405 + PP_1516 0.13 -3.5
1,720,624 + PP_1516 0.33 -3.4
1,720,666 + PP_1516 0.37 -3.0
1,720,667 - PP_1516 0.37 -2.0
1,720,733 - PP_1516 0.43 +1.4
1,720,757 - PP_1516 0.45 +1.8
1,720,763 + PP_1516 0.46 -1.8
1,721,215 + PP_1516 0.87 -3.3
1,721,216 - PP_1516 0.87 -3.3
1,721,288 + -3.1
1,721,310 - -1.0
1,721,336 + -0.2
1,721,337 - -1.4
1,721,337 - -0.4
1,721,359 + -3.0
1,721,603 - +0.3
1,721,796 + PP_1517 0.14 +1.9
1,721,796 + PP_1517 0.14 -2.0
1,721,796 + PP_1517 0.14 -2.1
1,721,796 + PP_1517 0.14 +1.0
1,721,796 + PP_1517 0.14 -1.5
1,721,797 - PP_1517 0.14 +0.3
1,721,800 + PP_1517 0.14 -0.1
1,721,800 + PP_1517 0.14 +1.6
1,721,800 + PP_1517 0.14 +3.3
1,721,800 + PP_1517 0.14 +1.0
1,721,800 + PP_1517 0.14 -2.3
1,721,800 + PP_1517 0.14 -3.2
1,721,827 + PP_1517 0.15 -0.1
1,721,845 + PP_1517 0.16 -2.1
1,721,846 - PP_1517 0.16 -0.2
1,721,857 - PP_1517 0.16 -0.5
1,722,300 + PP_1517 0.30 -2.3
1,722,300 + PP_1517 0.30 -2.0
1,722,300 + PP_1517 0.30 +1.5
1,722,301 - PP_1517 0.30 +1.5
1,722,301 - PP_1517 0.30 -1.9

Or see this region's nucleotide sequence