Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04355 and PS417_04360 overlap by 14 nucleotides PS417_04360 and PS417_04365 are separated by 8 nucleotides PS417_04365 and PS417_04370 are separated by 0 nucleotides
PS417_04355: PS417_04355 - organic solvent tolerance protein OstA, at 973,461 to 973,994
_04355
PS417_04360: PS417_04360 - lipopolysaccharide ABC transporter permease, at 973,981 to 974,553
_04360
PS417_04365: PS417_04365 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 974,562 to 975,086
_04365
PS417_04370: PS417_04370 - D-arabinose 5-phosphate isomerase, at 975,087 to 976,061
_04370
Position (kb) 974
975
976 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 974.564 kb on - strand at 974.566 kb on - strand at 974.566 kb on - strand at 974.566 kb on - strand at 974.780 kb on - strand, within PS417_04365 at 974.785 kb on - strand, within PS417_04365 at 975.089 kb on - strand at 976.074 kb on - strand at 976.076 kb on - strand at 976.076 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 974,564 - +0.0 974,566 - -2.3 974,566 - +0.0 974,566 - +0.5 974,780 - PS417_04365 0.42 -0.3 974,785 - PS417_04365 0.42 -3.0 975,089 - -1.4 976,074 - +1.5 976,076 - -1.9 976,076 - -1.9
Or see this region's nucleotide sequence