Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27885 and PS417_27890 are separated by 84 nucleotides PS417_27890 and PS417_27895 overlap by 8 nucleotides
PS417_27885: PS417_27885 - hypothetical protein, at 6,011,088 to 6,012,008
_27885
PS417_27890: PS417_27890 - type VI secretion protein, at 6,012,093 to 6,013,802
_27890
PS417_27895: PS417_27895 - membrane protein, at 6,013,795 to 6,014,979
_27895
Position (kb)
6012
6013
6014 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 6011.341 kb on - strand, within PS417_27885 at 6011.383 kb on + strand, within PS417_27885 at 6011.395 kb on + strand at 6011.395 kb on + strand, within PS417_27885 at 6011.395 kb on + strand, within PS417_27885 at 6011.630 kb on - strand, within PS417_27885 at 6011.680 kb on + strand, within PS417_27885 at 6011.681 kb on - strand, within PS417_27885 at 6011.878 kb on + strand, within PS417_27885 at 6011.881 kb on + strand, within PS417_27885 at 6011.882 kb on - strand, within PS417_27885 at 6012.008 kb on + strand at 6012.009 kb on - strand at 6012.312 kb on - strand, within PS417_27890 at 6012.314 kb on - strand, within PS417_27890 at 6012.445 kb on + strand, within PS417_27890 at 6012.446 kb on - strand, within PS417_27890 at 6012.838 kb on + strand, within PS417_27890 at 6013.255 kb on + strand, within PS417_27890 at 6013.430 kb on - strand, within PS417_27890 at 6013.573 kb on + strand, within PS417_27890 at 6013.648 kb on + strand at 6013.648 kb on + strand at 6013.648 kb on + strand at 6013.648 kb on + strand at 6013.648 kb on + strand at 6013.648 kb on + strand at 6013.649 kb on - strand at 6013.792 kb on - strand at 6013.796 kb on + strand at 6013.797 kb on - strand at 6013.797 kb on - strand at 6013.957 kb on - strand, within PS417_27895 at 6013.983 kb on - strand, within PS417_27895 at 6014.246 kb on - strand, within PS417_27895 at 6014.248 kb on + strand, within PS417_27895 at 6014.249 kb on - strand at 6014.267 kb on + strand, within PS417_27895 at 6014.306 kb on + strand, within PS417_27895 at 6014.306 kb on + strand, within PS417_27895 at 6014.306 kb on + strand, within PS417_27895 at 6014.307 kb on - strand, within PS417_27895 at 6014.307 kb on - strand, within PS417_27895
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 6,011,341 - PS417_27885 0.27 -0.5 6,011,383 + PS417_27885 0.32 -0.1 6,011,395 + +0.7 6,011,395 + PS417_27885 0.33 -3.2 6,011,395 + PS417_27885 0.33 +0.7 6,011,630 - PS417_27885 0.59 -0.5 6,011,680 + PS417_27885 0.64 -1.0 6,011,681 - PS417_27885 0.64 +1.1 6,011,878 + PS417_27885 0.86 +0.2 6,011,881 + PS417_27885 0.86 +2.4 6,011,882 - PS417_27885 0.86 -1.9 6,012,008 + +1.5 6,012,009 - -0.8 6,012,312 - PS417_27890 0.13 +0.3 6,012,314 - PS417_27890 0.13 -0.2 6,012,445 + PS417_27890 0.21 -0.8 6,012,446 - PS417_27890 0.21 +1.8 6,012,838 + PS417_27890 0.44 +2.1 6,013,255 + PS417_27890 0.68 +0.6 6,013,430 - PS417_27890 0.78 +0.8 6,013,573 + PS417_27890 0.87 -1.1 6,013,648 + -0.7 6,013,648 + +0.9 6,013,648 + -0.8 6,013,648 + -1.3 6,013,648 + -2.3 6,013,648 + +0.6 6,013,649 - +0.5 6,013,792 - +1.4 6,013,796 + -2.3 6,013,797 - +0.5 6,013,797 - +1.3 6,013,957 - PS417_27895 0.14 -1.9 6,013,983 - PS417_27895 0.16 +2.6 6,014,246 - PS417_27895 0.38 +0.0 6,014,248 + PS417_27895 0.38 +1.4 6,014,249 - -0.3 6,014,267 + PS417_27895 0.40 -0.2 6,014,306 + PS417_27895 0.43 +4.9 6,014,306 + PS417_27895 0.43 +1.8 6,014,306 + PS417_27895 0.43 -1.5 6,014,307 - PS417_27895 0.43 +1.0 6,014,307 - PS417_27895 0.43 +1.6
Or see this region's nucleotide sequence