Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26150 and PS417_26155 overlap by 4 nucleotides PS417_26155 and PS417_26160 are separated by 136 nucleotides PS417_26160 and PS417_26165 are separated by 75 nucleotides
PS417_26150: PS417_26150 - acyltransferase, at 5,650,908 to 5,651,795
_26150
PS417_26155: PS417_26155 - hypothetical protein, at 5,651,792 to 5,652,364
_26155
PS417_26160: PS417_26160 - hypothetical protein, at 5,652,501 to 5,652,959
_26160
PS417_26165: PS417_26165 - aldehyde dismutase, at 5,653,035 to 5,654,234
_26165
Position (kb) 5652
5653 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5651.863 kb on - strand, within PS417_26155 at 5651.863 kb on - strand, within PS417_26155 at 5652.383 kb on + strand at 5652.455 kb on + strand at 5652.500 kb on + strand at 5652.501 kb on - strand at 5652.501 kb on - strand at 5652.524 kb on - strand at 5652.612 kb on + strand, within PS417_26160 at 5652.612 kb on + strand, within PS417_26160 at 5652.612 kb on + strand at 5652.613 kb on - strand at 5652.613 kb on - strand, within PS417_26160 at 5652.890 kb on + strand, within PS417_26160 at 5652.890 kb on + strand, within PS417_26160 at 5652.891 kb on - strand, within PS417_26160 at 5652.933 kb on + strand at 5652.933 kb on + strand at 5652.961 kb on - strand at 5653.055 kb on + strand at 5653.056 kb on - strand at 5653.204 kb on + strand, within PS417_26165 at 5653.205 kb on - strand, within PS417_26165 at 5653.205 kb on - strand, within PS417_26165 at 5653.663 kb on + strand, within PS417_26165 at 5653.663 kb on + strand, within PS417_26165 at 5653.664 kb on - strand, within PS417_26165 at 5653.819 kb on + strand, within PS417_26165 at 5653.820 kb on - strand, within PS417_26165 at 5653.948 kb on - strand, within PS417_26165
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,651,863 - PS417_26155 0.12 -1.5 5,651,863 - PS417_26155 0.12 -0.4 5,652,383 + +0.1 5,652,455 + -0.2 5,652,500 + -2.1 5,652,501 - -3.0 5,652,501 - -0.7 5,652,524 - +0.1 5,652,612 + PS417_26160 0.24 -0.5 5,652,612 + PS417_26160 0.24 -0.1 5,652,612 + +0.1 5,652,613 - +1.6 5,652,613 - PS417_26160 0.24 -1.1 5,652,890 + PS417_26160 0.85 +0.5 5,652,890 + PS417_26160 0.85 -0.9 5,652,891 - PS417_26160 0.85 -2.6 5,652,933 + -1.8 5,652,933 + -0.7 5,652,961 - -0.3 5,653,055 + +0.1 5,653,056 - -0.9 5,653,204 + PS417_26165 0.14 -0.7 5,653,205 - PS417_26165 0.14 +0.3 5,653,205 - PS417_26165 0.14 -0.3 5,653,663 + PS417_26165 0.52 +3.8 5,653,663 + PS417_26165 0.52 +0.3 5,653,664 - PS417_26165 0.52 +1.0 5,653,819 + PS417_26165 0.65 -1.0 5,653,820 - PS417_26165 0.65 -0.2 5,653,948 - PS417_26165 0.76 -0.9
Or see this region's nucleotide sequence