Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24735 and PS417_24740 are separated by 69 nucleotides PS417_24740 and PS417_24745 overlap by 1 nucleotides PS417_24745 and PS417_24750 are separated by 174 nucleotides
PS417_24735: PS417_24735 - ribosome-associated protein IOJAP, at 5,366,599 to 5,367,093
_24735
PS417_24740: PS417_24740 - nicotinate-nucleotide adenylyltransferase, at 5,367,163 to 5,367,807
_24740
PS417_24745: PS417_24745 - gamma-glutamyl phosphate reductase, at 5,367,807 to 5,369,072
_24745
PS417_24750: PS417_24750 - 3-methyladenine DNA glycosylase, at 5,369,247 to 5,369,930
_24750
Position (kb) 5367
5368
5369
5370 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 5367.114 kb on - strand at 5367.114 kb on - strand at 5367.114 kb on - strand at 5367.114 kb on - strand at 5368.133 kb on - strand, within PS417_24745 at 5368.370 kb on - strand, within PS417_24745 at 5368.370 kb on - strand, within PS417_24745 at 5368.370 kb on - strand, within PS417_24745 at 5368.501 kb on - strand, within PS417_24745 at 5369.110 kb on - strand at 5369.110 kb on - strand at 5369.110 kb on - strand at 5369.112 kb on - strand at 5369.112 kb on - strand at 5369.112 kb on - strand at 5369.112 kb on - strand at 5369.112 kb on - strand at 5369.168 kb on - strand at 5369.193 kb on - strand at 5369.208 kb on - strand at 5369.224 kb on + strand at 5369.225 kb on - strand at 5369.403 kb on + strand, within PS417_24750 at 5369.407 kb on - strand, within PS417_24750 at 5369.407 kb on - strand, within PS417_24750 at 5369.443 kb on - strand, within PS417_24750 at 5369.483 kb on + strand, within PS417_24750 at 5369.484 kb on - strand, within PS417_24750 at 5369.484 kb on - strand, within PS417_24750 at 5369.487 kb on + strand, within PS417_24750 at 5369.487 kb on + strand, within PS417_24750 at 5369.487 kb on + strand, within PS417_24750 at 5369.487 kb on + strand, within PS417_24750 at 5369.488 kb on - strand, within PS417_24750 at 5369.488 kb on - strand, within PS417_24750 at 5369.488 kb on - strand, within PS417_24750 at 5369.488 kb on - strand, within PS417_24750 at 5369.488 kb on - strand, within PS417_24750 at 5369.488 kb on - strand, within PS417_24750 at 5369.488 kb on - strand, within PS417_24750 at 5369.488 kb on - strand, within PS417_24750 at 5369.493 kb on + strand, within PS417_24750 at 5369.494 kb on - strand, within PS417_24750 at 5369.494 kb on - strand, within PS417_24750 at 5369.494 kb on - strand, within PS417_24750 at 5369.494 kb on - strand, within PS417_24750 at 5369.496 kb on + strand, within PS417_24750 at 5369.497 kb on - strand, within PS417_24750 at 5369.751 kb on + strand, within PS417_24750 at 5369.751 kb on + strand, within PS417_24750 at 5369.752 kb on - strand, within PS417_24750 at 5369.752 kb on - strand, within PS417_24750 at 5369.932 kb on - strand at 5369.935 kb on + strand at 5369.935 kb on + strand at 5369.936 kb on - strand at 5369.936 kb on - strand at 5369.936 kb on - strand at 5369.936 kb on - strand at 5369.936 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,367,114 - +1.8 5,367,114 - +0.0 5,367,114 - -0.1 5,367,114 - -0.4 5,368,133 - PS417_24745 0.26 -5.3 5,368,370 - PS417_24745 0.44 -0.9 5,368,370 - PS417_24745 0.44 -1.8 5,368,370 - PS417_24745 0.44 -0.0 5,368,501 - PS417_24745 0.55 -1.0 5,369,110 - +3.4 5,369,110 - +2.2 5,369,110 - -0.4 5,369,112 - +0.8 5,369,112 - +1.2 5,369,112 - -0.8 5,369,112 - +0.3 5,369,112 - -0.9 5,369,168 - +1.6 5,369,193 - +0.8 5,369,208 - +0.2 5,369,224 + +1.1 5,369,225 - +0.3 5,369,403 + PS417_24750 0.23 -0.0 5,369,407 - PS417_24750 0.23 +1.3 5,369,407 - PS417_24750 0.23 -2.0 5,369,443 - PS417_24750 0.29 -0.5 5,369,483 + PS417_24750 0.35 -2.0 5,369,484 - PS417_24750 0.35 +0.5 5,369,484 - PS417_24750 0.35 +1.6 5,369,487 + PS417_24750 0.35 +0.6 5,369,487 + PS417_24750 0.35 +0.8 5,369,487 + PS417_24750 0.35 +0.2 5,369,487 + PS417_24750 0.35 -4.0 5,369,488 - PS417_24750 0.35 -0.3 5,369,488 - PS417_24750 0.35 -0.4 5,369,488 - PS417_24750 0.35 -1.6 5,369,488 - PS417_24750 0.35 +0.3 5,369,488 - PS417_24750 0.35 +0.0 5,369,488 - PS417_24750 0.35 +0.1 5,369,488 - PS417_24750 0.35 -0.4 5,369,488 - PS417_24750 0.35 +1.1 5,369,493 + PS417_24750 0.36 +2.4 5,369,494 - PS417_24750 0.36 -0.8 5,369,494 - PS417_24750 0.36 -1.3 5,369,494 - PS417_24750 0.36 +1.3 5,369,494 - PS417_24750 0.36 -1.9 5,369,496 + PS417_24750 0.36 +0.5 5,369,497 - PS417_24750 0.37 -0.4 5,369,751 + PS417_24750 0.74 +1.4 5,369,751 + PS417_24750 0.74 +1.5 5,369,752 - PS417_24750 0.74 +0.8 5,369,752 - PS417_24750 0.74 +0.3 5,369,932 - +0.5 5,369,935 + -0.2 5,369,935 + -0.0 5,369,936 - -0.5 5,369,936 - +1.1 5,369,936 - -0.0 5,369,936 - +1.4 5,369,936 - +0.3
Or see this region's nucleotide sequence