Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24730 and PS417_24735 are separated by 9 nucleotides PS417_24735 and PS417_24740 are separated by 69 nucleotides PS417_24740 and PS417_24745 overlap by 1 nucleotides
PS417_24730: PS417_24730 - 50S rRNA methyltransferase, at 5,366,122 to 5,366,589
_24730
PS417_24735: PS417_24735 - ribosome-associated protein IOJAP, at 5,366,599 to 5,367,093
_24735
PS417_24740: PS417_24740 - nicotinate-nucleotide adenylyltransferase, at 5,367,163 to 5,367,807
_24740
PS417_24745: PS417_24745 - gamma-glutamyl phosphate reductase, at 5,367,807 to 5,369,072
_24745
Position (kb) 5367
5368 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 5366.166 kb on - strand at 5367.114 kb on - strand at 5367.114 kb on - strand at 5367.114 kb on - strand at 5367.114 kb on - strand at 5368.133 kb on - strand, within PS417_24745 at 5368.370 kb on - strand, within PS417_24745 at 5368.370 kb on - strand, within PS417_24745 at 5368.370 kb on - strand, within PS417_24745 at 5368.501 kb on - strand, within PS417_24745
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,366,166 - +0.3 5,367,114 - +1.8 5,367,114 - +0.0 5,367,114 - -0.1 5,367,114 - -0.4 5,368,133 - PS417_24745 0.26 -5.3 5,368,370 - PS417_24745 0.44 -0.9 5,368,370 - PS417_24745 0.44 -1.8 5,368,370 - PS417_24745 0.44 -0.0 5,368,501 - PS417_24745 0.55 -1.0
Or see this region's nucleotide sequence