Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22850 and PS417_22855 are separated by 137 nucleotides PS417_22855 and PS417_22860 are separated by 60 nucleotides PS417_22860 and PS417_22865 are separated by 136 nucleotides
PS417_22850: PS417_22850 - virulence factor family protein, at 4,951,748 to 4,953,022
_22850
PS417_22855: PS417_22855 - ssDNA exonuclease RecJ, at 4,953,160 to 4,954,869
_22855
PS417_22860: PS417_22860 - hypothetical protein, at 4,954,930 to 4,955,472
_22860
PS417_22865: PS417_22865 - CoA-transferase, at 4,955,609 to 4,956,802
_22865
Position (kb) 4953
4954
4955 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4952.561 kb on + strand, within PS417_22850 at 4952.696 kb on + strand, within PS417_22850 at 4952.696 kb on + strand, within PS417_22850 at 4952.696 kb on + strand, within PS417_22850 at 4952.697 kb on - strand, within PS417_22850 at 4952.697 kb on - strand, within PS417_22850 at 4952.697 kb on - strand, within PS417_22850 at 4952.741 kb on - strand, within PS417_22850 at 4952.741 kb on - strand, within PS417_22850 at 4952.741 kb on - strand, within PS417_22850 at 4952.784 kb on + strand, within PS417_22850 at 4953.025 kb on + strand at 4953.233 kb on + strand at 4953.752 kb on + strand, within PS417_22855 at 4953.752 kb on + strand, within PS417_22855 at 4954.033 kb on - strand, within PS417_22855 at 4954.057 kb on - strand, within PS417_22855 at 4954.178 kb on - strand, within PS417_22855 at 4954.292 kb on + strand, within PS417_22855 at 4954.293 kb on - strand, within PS417_22855 at 4954.569 kb on - strand, within PS417_22855 at 4954.656 kb on + strand, within PS417_22855 at 4955.017 kb on + strand, within PS417_22860 at 4955.017 kb on + strand, within PS417_22860 at 4955.017 kb on + strand, within PS417_22860 at 4955.018 kb on - strand, within PS417_22860 at 4955.093 kb on - strand, within PS417_22860 at 4955.169 kb on + strand, within PS417_22860 at 4955.282 kb on - strand, within PS417_22860 at 4955.282 kb on - strand, within PS417_22860 at 4955.321 kb on + strand, within PS417_22860 at 4955.322 kb on - strand, within PS417_22860 at 4955.333 kb on + strand, within PS417_22860 at 4955.409 kb on - strand, within PS417_22860 at 4955.409 kb on - strand, within PS417_22860 at 4955.563 kb on - strand at 4955.563 kb on - strand at 4955.567 kb on + strand at 4955.771 kb on + strand, within PS417_22865 at 4955.771 kb on + strand, within PS417_22865 at 4955.772 kb on - strand, within PS417_22865 at 4955.772 kb on - strand, within PS417_22865
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,952,561 + PS417_22850 0.64 +1.6 4,952,696 + PS417_22850 0.74 +0.7 4,952,696 + PS417_22850 0.74 -1.0 4,952,696 + PS417_22850 0.74 -0.4 4,952,697 - PS417_22850 0.74 +0.9 4,952,697 - PS417_22850 0.74 +3.3 4,952,697 - PS417_22850 0.74 -0.3 4,952,741 - PS417_22850 0.78 +0.3 4,952,741 - PS417_22850 0.78 +1.1 4,952,741 - PS417_22850 0.78 -0.1 4,952,784 + PS417_22850 0.81 -0.2 4,953,025 + -1.6 4,953,233 + -0.1 4,953,752 + PS417_22855 0.35 -1.2 4,953,752 + PS417_22855 0.35 -2.1 4,954,033 - PS417_22855 0.51 -2.2 4,954,057 - PS417_22855 0.52 -0.1 4,954,178 - PS417_22855 0.60 -2.4 4,954,292 + PS417_22855 0.66 -0.0 4,954,293 - PS417_22855 0.66 -2.0 4,954,569 - PS417_22855 0.82 -0.0 4,954,656 + PS417_22855 0.87 -1.4 4,955,017 + PS417_22860 0.16 -0.8 4,955,017 + PS417_22860 0.16 -0.5 4,955,017 + PS417_22860 0.16 -2.9 4,955,018 - PS417_22860 0.16 +0.4 4,955,093 - PS417_22860 0.30 +1.4 4,955,169 + PS417_22860 0.44 +1.5 4,955,282 - PS417_22860 0.65 -0.4 4,955,282 - PS417_22860 0.65 +0.3 4,955,321 + PS417_22860 0.72 +0.6 4,955,322 - PS417_22860 0.72 -0.7 4,955,333 + PS417_22860 0.74 +1.4 4,955,409 - PS417_22860 0.88 -1.1 4,955,409 - PS417_22860 0.88 -1.1 4,955,563 - -0.9 4,955,563 - +0.2 4,955,567 + +0.6 4,955,771 + PS417_22865 0.14 -1.2 4,955,771 + PS417_22865 0.14 +0.4 4,955,772 - PS417_22865 0.14 +0.3 4,955,772 - PS417_22865 0.14 -0.5
Or see this region's nucleotide sequence