Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19705 and PS417_19710 are separated by 12 nucleotides PS417_19710 and PS417_19715 are separated by 398 nucleotides PS417_19715 and PS417_19720 are separated by 18 nucleotides PS417_19720 and PS417_19725 are separated by 135 nucleotides
PS417_19705: PS417_19705 - flagellar biosynthesis regulator FlhF, at 4,281,893 to 4,283,209
_19705
PS417_19710: PS417_19710 - flagellar biosynthesis protein FlhA, at 4,283,222 to 4,285,351
_19710
PS417_19715: PS417_19715 - cold-shock protein, at 4,285,750 to 4,285,953
_19715
PS417_19720: PS417_19720 - DNA-binding protein, at 4,285,972 to 4,286,184
_19720
PS417_19725: PS417_19725 - flagellar biosynthesis protein FlhB, at 4,286,320 to 4,287,456
_19725
Position (kb) 4283
4284
4285
4286 Strain fitness (log2 ratio) -9
-8
-7
-6
-5
-4
-3
-2
-1
0
1
2 at 4282.474 kb on - strand, within PS417_19705 at 4282.482 kb on - strand, within PS417_19705 at 4283.074 kb on - strand, within PS417_19705 at 4283.498 kb on + strand, within PS417_19710 at 4283.499 kb on - strand at 4283.552 kb on + strand, within PS417_19710 at 4283.552 kb on + strand at 4283.552 kb on + strand, within PS417_19710 at 4283.552 kb on + strand, within PS417_19710 at 4283.614 kb on + strand, within PS417_19710 at 4283.835 kb on + strand, within PS417_19710 at 4283.836 kb on - strand, within PS417_19710 at 4283.836 kb on - strand, within PS417_19710 at 4283.969 kb on - strand, within PS417_19710 at 4284.027 kb on + strand, within PS417_19710 at 4284.378 kb on + strand, within PS417_19710 at 4284.378 kb on + strand, within PS417_19710 at 4284.379 kb on - strand, within PS417_19710 at 4284.442 kb on + strand, within PS417_19710 at 4284.443 kb on - strand, within PS417_19710 at 4284.568 kb on + strand, within PS417_19710 at 4284.572 kb on + strand, within PS417_19710 at 4284.628 kb on - strand, within PS417_19710 at 4284.671 kb on - strand, within PS417_19710 at 4284.768 kb on + strand, within PS417_19710 at 4284.768 kb on + strand, within PS417_19710 at 4284.929 kb on + strand, within PS417_19710 at 4284.929 kb on + strand, within PS417_19710 at 4284.930 kb on - strand at 4284.932 kb on + strand, within PS417_19710 at 4284.932 kb on + strand at 4284.984 kb on + strand, within PS417_19710 at 4284.984 kb on + strand, within PS417_19710 at 4284.985 kb on - strand, within PS417_19710 at 4284.985 kb on - strand, within PS417_19710 at 4284.985 kb on - strand, within PS417_19710 at 4284.985 kb on - strand, within PS417_19710 at 4284.989 kb on - strand, within PS417_19710 at 4285.134 kb on - strand, within PS417_19710 at 4285.286 kb on + strand at 4285.286 kb on + strand at 4285.287 kb on - strand at 4285.287 kb on - strand at 4285.287 kb on - strand at 4285.483 kb on + strand at 4285.483 kb on + strand at 4285.483 kb on + strand at 4285.484 kb on - strand at 4285.511 kb on - strand at 4285.640 kb on - strand at 4285.693 kb on + strand at 4285.694 kb on - strand at 4285.694 kb on - strand at 4285.702 kb on + strand at 4285.703 kb on - strand at 4285.730 kb on + strand at 4285.731 kb on - strand at 4285.753 kb on + strand at 4285.927 kb on - strand, within PS417_19715 at 4286.012 kb on + strand, within PS417_19720 at 4286.153 kb on + strand, within PS417_19720 at 4286.235 kb on - strand at 4286.237 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,282,474 - PS417_19705 0.44 -3.2 4,282,482 - PS417_19705 0.45 -2.8 4,283,074 - PS417_19705 0.90 -3.4 4,283,498 + PS417_19710 0.13 -5.1 4,283,499 - -0.4 4,283,552 + PS417_19710 0.15 -3.1 4,283,552 + -1.8 4,283,552 + PS417_19710 0.15 -6.4 4,283,552 + PS417_19710 0.15 -4.3 4,283,614 + PS417_19710 0.18 -2.2 4,283,835 + PS417_19710 0.29 -5.1 4,283,836 - PS417_19710 0.29 -3.9 4,283,836 - PS417_19710 0.29 -2.3 4,283,969 - PS417_19710 0.35 -1.4 4,284,027 + PS417_19710 0.38 -3.3 4,284,378 + PS417_19710 0.54 -3.1 4,284,378 + PS417_19710 0.54 -5.3 4,284,379 - PS417_19710 0.54 -7.0 4,284,442 + PS417_19710 0.57 +0.1 4,284,443 - PS417_19710 0.57 -4.3 4,284,568 + PS417_19710 0.63 -3.3 4,284,572 + PS417_19710 0.63 -6.6 4,284,628 - PS417_19710 0.66 -2.1 4,284,671 - PS417_19710 0.68 -3.3 4,284,768 + PS417_19710 0.73 -5.2 4,284,768 + PS417_19710 0.73 -9.6 4,284,929 + PS417_19710 0.80 -4.5 4,284,929 + PS417_19710 0.80 -4.9 4,284,930 - -1.8 4,284,932 + PS417_19710 0.80 -5.3 4,284,932 + -0.7 4,284,984 + PS417_19710 0.83 -5.3 4,284,984 + PS417_19710 0.83 -4.8 4,284,985 - PS417_19710 0.83 -5.1 4,284,985 - PS417_19710 0.83 -4.7 4,284,985 - PS417_19710 0.83 -7.5 4,284,985 - PS417_19710 0.83 -6.1 4,284,989 - PS417_19710 0.83 -5.1 4,285,134 - PS417_19710 0.90 -2.9 4,285,286 + -6.5 4,285,286 + -6.9 4,285,287 - -3.2 4,285,287 - -4.7 4,285,287 - -8.5 4,285,483 + +1.3 4,285,483 + -1.5 4,285,483 + +2.6 4,285,484 - +0.2 4,285,511 - -1.7 4,285,640 - -0.9 4,285,693 + +0.9 4,285,694 - +0.1 4,285,694 - -2.4 4,285,702 + +0.9 4,285,703 - -2.6 4,285,730 + +0.5 4,285,731 - -1.5 4,285,753 + +0.4 4,285,927 - PS417_19715 0.87 -1.8 4,286,012 + PS417_19720 0.19 +0.9 4,286,153 + PS417_19720 0.85 +1.4 4,286,235 - +0.4 4,286,237 + +1.3
Or see this region's nucleotide sequence