Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19030 and PS417_19035 are separated by 52 nucleotides PS417_19035 and PS417_19040 are separated by 115 nucleotides PS417_19040 and PS417_19045 overlap by 4 nucleotides
PS417_19030: PS417_19030 - sodium:dicarboxylate symporter, at 4,118,147 to 4,119,424
_19030
PS417_19035: PS417_19035 - heat-shock protein, at 4,119,477 to 4,119,935
_19035
PS417_19040: PS417_19040 - aspartate racemase, at 4,120,051 to 4,121,502
_19040
PS417_19045: PS417_19045 - amino acid:proton symporter, at 4,121,499 to 4,122,761
_19045
Position (kb)
4120
4121
4122 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4119.464 kb on + strand at 4119.926 kb on + strand at 4119.929 kb on + strand at 4119.930 kb on - strand at 4120.003 kb on + strand at 4120.004 kb on - strand at 4120.007 kb on + strand at 4120.065 kb on - strand at 4120.065 kb on - strand at 4120.093 kb on - strand at 4120.185 kb on + strand at 4120.299 kb on - strand, within PS417_19040 at 4120.439 kb on + strand, within PS417_19040 at 4120.440 kb on - strand, within PS417_19040 at 4120.440 kb on - strand, within PS417_19040 at 4120.641 kb on + strand, within PS417_19040 at 4120.641 kb on + strand, within PS417_19040 at 4120.648 kb on + strand, within PS417_19040 at 4120.649 kb on - strand, within PS417_19040 at 4120.993 kb on + strand, within PS417_19040 at 4121.009 kb on + strand, within PS417_19040 at 4121.009 kb on + strand, within PS417_19040 at 4121.010 kb on - strand, within PS417_19040 at 4121.010 kb on - strand, within PS417_19040 at 4121.306 kb on + strand, within PS417_19040 at 4121.306 kb on + strand, within PS417_19040 at 4121.306 kb on + strand, within PS417_19040 at 4121.788 kb on + strand, within PS417_19045 at 4121.788 kb on + strand, within PS417_19045 at 4121.825 kb on - strand, within PS417_19045 at 4122.147 kb on + strand, within PS417_19045 at 4122.148 kb on - strand, within PS417_19045 at 4122.175 kb on + strand, within PS417_19045 at 4122.233 kb on + strand, within PS417_19045 at 4122.234 kb on - strand, within PS417_19045 at 4122.234 kb on - strand, within PS417_19045 at 4122.236 kb on - strand, within PS417_19045 at 4122.423 kb on - strand, within PS417_19045
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,119,464 + +1.6 4,119,926 + -0.4 4,119,929 + +0.3 4,119,930 - -0.9 4,120,003 + +0.8 4,120,004 - -0.3 4,120,007 + +0.2 4,120,065 - -0.8 4,120,065 - +0.1 4,120,093 - +0.5 4,120,185 + -0.7 4,120,299 - PS417_19040 0.17 +0.7 4,120,439 + PS417_19040 0.27 +0.9 4,120,440 - PS417_19040 0.27 +0.1 4,120,440 - PS417_19040 0.27 +0.8 4,120,641 + PS417_19040 0.41 +0.8 4,120,641 + PS417_19040 0.41 -0.3 4,120,648 + PS417_19040 0.41 +1.0 4,120,649 - PS417_19040 0.41 +0.8 4,120,993 + PS417_19040 0.65 -1.6 4,121,009 + PS417_19040 0.66 -1.3 4,121,009 + PS417_19040 0.66 +1.9 4,121,010 - PS417_19040 0.66 +0.4 4,121,010 - PS417_19040 0.66 -0.8 4,121,306 + PS417_19040 0.86 +0.2 4,121,306 + PS417_19040 0.86 -1.3 4,121,306 + PS417_19040 0.86 +0.8 4,121,788 + PS417_19045 0.23 -0.1 4,121,788 + PS417_19045 0.23 +0.3 4,121,825 - PS417_19045 0.26 -0.8 4,122,147 + PS417_19045 0.51 -0.6 4,122,148 - PS417_19045 0.51 -0.3 4,122,175 + PS417_19045 0.54 +0.1 4,122,233 + PS417_19045 0.58 +3.2 4,122,234 - PS417_19045 0.58 +0.3 4,122,234 - PS417_19045 0.58 +0.3 4,122,236 - PS417_19045 0.58 +0.2 4,122,423 - PS417_19045 0.73 -1.7
Or see this region's nucleotide sequence