Strain Fitness in Pseudomonas simiae WCS417 around PS417_17330

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17325 and PS417_17330 overlap by 1 nucleotidesPS417_17330 and PS417_17335 are separated by 118 nucleotidesPS417_17335 and PS417_17340 are separated by 143 nucleotides PS417_17325: PS417_17325 - dihydropyrimidine dehydrogenase, at 3,785,623 to 3,786,990 _17325 PS417_17330: PS417_17330 - Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data), at 3,786,990 to 3,788,264 _17330 PS417_17335: PS417_17335 - TetR family transcriptional regulator, at 3,788,383 to 3,789,003 _17335 PS417_17340: PS417_17340 - GNAT family acetyltransferase, at 3,789,147 to 3,789,614 _17340 Position (kb) 3786 3787 3788 3789Strain fitness (log2 ratio) -3 -2 -1 0 1at 3786.178 kb on + strand, within PS417_17325at 3786.178 kb on + strand, within PS417_17325at 3786.394 kb on + strand, within PS417_17325at 3786.394 kb on + strandat 3786.602 kb on + strand, within PS417_17325at 3787.009 kb on + strandat 3787.074 kb on + strandat 3787.075 kb on - strandat 3787.075 kb on - strandat 3787.180 kb on - strand, within PS417_17330at 3787.455 kb on + strand, within PS417_17330at 3787.891 kb on + strand, within PS417_17330at 3787.974 kb on + strand, within PS417_17330at 3787.989 kb on - strand, within PS417_17330at 3788.109 kb on - strand, within PS417_17330at 3788.263 kb on - strandat 3788.323 kb on + strandat 3788.323 kb on + strandat 3788.323 kb on + strandat 3788.431 kb on + strandat 3788.507 kb on + strand, within PS417_17335at 3788.508 kb on - strand, within PS417_17335at 3788.534 kb on + strand, within PS417_17335at 3788.534 kb on + strand, within PS417_17335at 3788.534 kb on + strand, within PS417_17335at 3788.535 kb on - strand, within PS417_17335at 3788.736 kb on - strand, within PS417_17335at 3788.828 kb on + strand, within PS417_17335at 3788.852 kb on + strand, within PS417_17335at 3788.852 kb on + strand, within PS417_17335at 3788.852 kb on + strand, within PS417_17335at 3788.852 kb on + strand, within PS417_17335at 3788.852 kb on + strand, within PS417_17335at 3788.853 kb on - strand, within PS417_17335at 3788.853 kb on - strandat 3788.918 kb on + strandat 3788.919 kb on - strand, within PS417_17335at 3789.152 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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3,786,178 + PS417_17325 0.41 +0.8
3,786,178 + PS417_17325 0.41 +1.0
3,786,394 + PS417_17325 0.56 -2.1
3,786,394 + +0.2
3,786,602 + PS417_17325 0.72 +0.5
3,787,009 + +0.6
3,787,074 + -3.3
3,787,075 - +0.7
3,787,075 - -0.3
3,787,180 - PS417_17330 0.15 -3.0
3,787,455 + PS417_17330 0.36 -0.2
3,787,891 + PS417_17330 0.71 +0.1
3,787,974 + PS417_17330 0.77 -1.2
3,787,989 - PS417_17330 0.78 -1.8
3,788,109 - PS417_17330 0.88 -0.8
3,788,263 - -1.6
3,788,323 + -0.8
3,788,323 + +0.8
3,788,323 + +0.7
3,788,431 + -0.2
3,788,507 + PS417_17335 0.20 -0.7
3,788,508 - PS417_17335 0.20 -0.5
3,788,534 + PS417_17335 0.24 +0.3
3,788,534 + PS417_17335 0.24 -0.4
3,788,534 + PS417_17335 0.24 +0.5
3,788,535 - PS417_17335 0.24 -0.3
3,788,736 - PS417_17335 0.57 -1.3
3,788,828 + PS417_17335 0.72 -0.7
3,788,852 + PS417_17335 0.76 -0.9
3,788,852 + PS417_17335 0.76 +0.4
3,788,852 + PS417_17335 0.76 +0.3
3,788,852 + PS417_17335 0.76 -0.3
3,788,852 + PS417_17335 0.76 +0.4
3,788,853 - PS417_17335 0.76 -0.6
3,788,853 - +0.5
3,788,918 + +0.9
3,788,919 - PS417_17335 0.86 +0.1
3,789,152 + -0.1

Or see this region's nucleotide sequence