Strain Fitness in Pseudomonas simiae WCS417 around PS417_01230

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01215 and PS417_01220 are separated by 28 nucleotidesPS417_01220 and PS417_01230 are separated by 610 nucleotidesPS417_01230 and PS417_01235 overlap by 28 nucleotidesPS417_01235 and PS417_01245 are separated by 345 nucleotides PS417_01215: PS417_01215 - membrane protein, at 267,031 to 267,882 _01215 PS417_01220: PS417_01220 - hypothetical protein, at 267,911 to 268,267 _01220 PS417_01230: PS417_01230 - hypothetical protein, at 268,878 to 269,123 _01230 PS417_01235: PS417_01235 - cell division protein Fic, at 269,096 to 269,695 _01235 PS417_01245: PS417_01245 - hypothetical protein, at 270,041 to 271,216 _01245 Position (kb) 268 269 270Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 267.897 kb on - strandat 267.897 kb on - strandat 267.897 kb on - strandat 267.897 kb on - strandat 267.966 kb on + strand, within PS417_01220at 267.967 kb on - strand, within PS417_01220at 267.967 kb on - strand, within PS417_01220at 268.054 kb on - strand, within PS417_01220at 268.059 kb on + strand, within PS417_01220at 268.059 kb on + strand, within PS417_01220at 268.059 kb on + strand, within PS417_01220at 268.060 kb on - strand, within PS417_01220at 268.060 kb on - strand, within PS417_01220at 268.060 kb on - strand, within PS417_01220at 268.358 kb on + strandat 268.358 kb on + strandat 268.359 kb on - strandat 268.359 kb on - strandat 268.397 kb on + strandat 268.397 kb on + strandat 268.397 kb on + strandat 268.397 kb on + strandat 268.397 kb on + strandat 268.401 kb on + strandat 268.401 kb on + strandat 268.401 kb on + strandat 268.401 kb on + strandat 268.402 kb on - strandat 268.402 kb on - strandat 268.402 kb on - strandat 268.406 kb on + strandat 268.406 kb on + strandat 268.409 kb on + strandat 268.409 kb on + strandat 268.409 kb on + strandat 268.423 kb on + strandat 268.500 kb on + strandat 268.501 kb on - strandat 268.501 kb on - strandat 268.501 kb on - strandat 268.504 kb on + strandat 268.504 kb on + strandat 268.598 kb on + strandat 268.598 kb on + strandat 268.599 kb on - strandat 268.599 kb on - strandat 268.599 kb on - strandat 268.648 kb on + strandat 268.652 kb on + strandat 268.652 kb on + strandat 268.652 kb on + strandat 268.652 kb on + strandat 268.652 kb on + strandat 268.653 kb on - strandat 268.820 kb on + strandat 268.820 kb on + strandat 269.011 kb on - strand, within PS417_01230at 269.011 kb on - strand, within PS417_01230at 269.014 kb on + strand, within PS417_01230at 269.015 kb on - strand, within PS417_01230at 269.015 kb on - strand, within PS417_01230at 269.078 kb on + strand, within PS417_01230at 269.119 kb on + strandat 269.120 kb on - strandat 269.173 kb on + strand, within PS417_01235at 269.173 kb on + strand, within PS417_01235at 269.361 kb on + strand, within PS417_01235at 269.361 kb on + strand, within PS417_01235at 269.362 kb on - strand, within PS417_01235at 269.485 kb on - strand, within PS417_01235at 269.512 kb on + strand, within PS417_01235at 269.513 kb on - strand, within PS417_01235at 269.513 kb on - strand, within PS417_01235at 269.513 kb on - strand, within PS417_01235at 269.535 kb on + strand, within PS417_01235at 269.536 kb on - strand, within PS417_01235at 269.828 kb on + strandat 269.873 kb on + strandat 269.899 kb on + strandat 269.949 kb on + strandat 269.982 kb on + strandat 269.983 kb on - strandat 269.983 kb on - strandat 269.983 kb on - strandat 270.004 kb on + strandat 270.005 kb on - strandat 270.022 kb on + strandat 270.023 kb on - strandat 270.023 kb on - strandat 270.026 kb on + strandat 270.026 kb on + strandat 270.027 kb on - strandat 270.027 kb on - strandat 270.036 kb on + strandat 270.037 kb on - strandat 270.037 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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267,897 - +1.2
267,897 - -2.9
267,897 - +0.0
267,897 - +1.6
267,966 + PS417_01220 0.15 +1.5
267,967 - PS417_01220 0.16 +1.3
267,967 - PS417_01220 0.16 -0.5
268,054 - PS417_01220 0.40 -0.2
268,059 + PS417_01220 0.41 +0.2
268,059 + PS417_01220 0.41 +0.4
268,059 + PS417_01220 0.41 +0.8
268,060 - PS417_01220 0.42 +1.2
268,060 - PS417_01220 0.42 +0.3
268,060 - PS417_01220 0.42 +0.2
268,358 + -0.5
268,358 + +0.8
268,359 - +2.4
268,359 - +0.0
268,397 + -1.0
268,397 + -1.2
268,397 + -0.5
268,397 + +0.2
268,397 + +0.1
268,401 + -0.4
268,401 + -0.2
268,401 + +1.4
268,401 + -1.3
268,402 - -2.9
268,402 - +1.4
268,402 - +0.0
268,406 + +0.1
268,406 + +1.8
268,409 + +0.7
268,409 + +0.3
268,409 + -0.7
268,423 + +1.4
268,500 + -1.0
268,501 - +0.7
268,501 - -0.1
268,501 - +0.9
268,504 + +1.4
268,504 + +0.8
268,598 + +0.4
268,598 + +0.3
268,599 - -0.5
268,599 - -3.5
268,599 - +0.2
268,648 + +0.7
268,652 + +0.2
268,652 + +1.4
268,652 + -2.3
268,652 + +3.2
268,652 + -0.7
268,653 - +1.7
268,820 + +0.8
268,820 + +0.8
269,011 - PS417_01230 0.54 +1.1
269,011 - PS417_01230 0.54 +0.8
269,014 + PS417_01230 0.55 +1.0
269,015 - PS417_01230 0.56 -0.5
269,015 - PS417_01230 0.56 +1.1
269,078 + PS417_01230 0.81 +0.7
269,119 + +3.6
269,120 - +0.5
269,173 + PS417_01235 0.13 +0.4
269,173 + PS417_01235 0.13 -1.8
269,361 + PS417_01235 0.44 -0.2
269,361 + PS417_01235 0.44 -0.6
269,362 - PS417_01235 0.44 +0.3
269,485 - PS417_01235 0.65 -1.8
269,512 + PS417_01235 0.69 -2.1
269,513 - PS417_01235 0.69 +0.7
269,513 - PS417_01235 0.69 -2.4
269,513 - PS417_01235 0.69 -0.3
269,535 + PS417_01235 0.73 +1.2
269,536 - PS417_01235 0.73 -0.1
269,828 + +0.8
269,873 + +2.8
269,899 + -0.0
269,949 + -1.6
269,982 + +0.1
269,983 - +1.7
269,983 - -0.1
269,983 - -0.3
270,004 + +0.0
270,005 - +0.9
270,022 + -2.3
270,023 - +0.2
270,023 - +1.3
270,026 + -0.8
270,026 + +3.4
270,027 - +0.3
270,027 - +1.0
270,036 + +0.8
270,037 - -3.7
270,037 - -0.2

Or see this region's nucleotide sequence