Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11980 and PS417_11990 are separated by 350 nucleotides PS417_11990 and PS417_11995 are separated by 15 nucleotides PS417_11995 and PS417_12000 overlap by 4 nucleotides PS417_12000 and PS417_12005 overlap by 4 nucleotides PS417_12005 and PS417_12010 are separated by 56 nucleotides
PS417_11980: PS417_11980 - hypothetical protein, at 2,607,077 to 2,607,325
_11980
PS417_11990: PS417_11990 - hypothetical protein, at 2,607,676 to 2,607,987
_11990
PS417_11995: PS417_11995 - RNA polymerase sigma factor, at 2,608,003 to 2,608,581
_11995
PS417_12000: PS417_12000 - hypothetical protein, at 2,608,578 to 2,609,009
_12000
PS417_12005: PS417_12005 - hypothetical protein, at 2,609,006 to 2,609,494
_12005
PS417_12010: PS417_12010 - SCP-2 family sterol carrier protein, at 2,609,551 to 2,609,865
_12010
Position (kb)
2608
2609 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2607.024 kb on + strand at 2607.024 kb on + strand at 2607.025 kb on - strand at 2607.025 kb on - strand at 2607.025 kb on - strand at 2607.025 kb on - strand at 2607.025 kb on - strand at 2607.025 kb on - strand at 2607.365 kb on + strand at 2607.365 kb on + strand at 2607.446 kb on + strand at 2607.587 kb on - strand at 2608.037 kb on + strand at 2608.038 kb on - strand at 2608.038 kb on - strand at 2608.429 kb on + strand, within PS417_11995 at 2609.167 kb on - strand, within PS417_12005 at 2609.210 kb on - strand, within PS417_12005 at 2609.210 kb on - strand, within PS417_12005 at 2609.432 kb on + strand, within PS417_12005 at 2609.493 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,607,024 + -0.7 2,607,024 + -0.1 2,607,025 - -0.4 2,607,025 - -0.5 2,607,025 - -0.6 2,607,025 - +0.8 2,607,025 - +0.1 2,607,025 - +1.0 2,607,365 + +2.0 2,607,365 + -0.7 2,607,446 + -0.4 2,607,587 - +0.5 2,608,037 + -0.7 2,608,038 - -0.9 2,608,038 - +0.1 2,608,429 + PS417_11995 0.74 +0.5 2,609,167 - PS417_12005 0.33 -1.6 2,609,210 - PS417_12005 0.42 -0.5 2,609,210 - PS417_12005 0.42 -0.2 2,609,432 + PS417_12005 0.87 -2.5 2,609,493 - -0.0
Or see this region's nucleotide sequence