Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11320 and PS417_11325 are separated by 67 nucleotides PS417_11325 and PS417_11330 overlap by 4 nucleotides
PS417_11320: PS417_11320 - hypothetical protein, at 2,436,433 to 2,438,019
_11320
PS417_11325: PS417_11325 - hypothetical protein, at 2,438,087 to 2,439,820
_11325
PS417_11330: PS417_11330 - tyrosinase, at 2,439,817 to 2,441,604
_11330
Position (kb)
2438
2439
2440 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2437.528 kb on - strand, within PS417_11320 at 2438.226 kb on + strand at 2438.226 kb on + strand at 2438.586 kb on + strand, within PS417_11325 at 2438.962 kb on - strand, within PS417_11325 at 2439.028 kb on + strand, within PS417_11325 at 2439.029 kb on - strand, within PS417_11325 at 2439.144 kb on + strand, within PS417_11325 at 2439.177 kb on + strand, within PS417_11325 at 2439.186 kb on + strand, within PS417_11325 at 2439.235 kb on - strand, within PS417_11325 at 2439.435 kb on + strand, within PS417_11325 at 2439.436 kb on - strand, within PS417_11325 at 2439.436 kb on - strand, within PS417_11325 at 2439.630 kb on + strand, within PS417_11325 at 2439.631 kb on - strand, within PS417_11325 at 2439.631 kb on - strand, within PS417_11325 at 2439.631 kb on - strand, within PS417_11325 at 2440.199 kb on + strand, within PS417_11330 at 2440.199 kb on + strand at 2440.451 kb on + strand, within PS417_11330 at 2440.512 kb on - strand, within PS417_11330 at 2440.580 kb on + strand, within PS417_11330 at 2440.580 kb on + strand, within PS417_11330 at 2440.601 kb on + strand, within PS417_11330 at 2440.811 kb on + strand, within PS417_11330 at 2440.811 kb on + strand, within PS417_11330
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,437,528 - PS417_11320 0.69 +0.3 2,438,226 + +0.2 2,438,226 + +0.1 2,438,586 + PS417_11325 0.29 -0.1 2,438,962 - PS417_11325 0.50 +2.3 2,439,028 + PS417_11325 0.54 -1.0 2,439,029 - PS417_11325 0.54 +0.5 2,439,144 + PS417_11325 0.61 +0.7 2,439,177 + PS417_11325 0.63 +3.2 2,439,186 + PS417_11325 0.63 +0.9 2,439,235 - PS417_11325 0.66 -2.3 2,439,435 + PS417_11325 0.78 +1.6 2,439,436 - PS417_11325 0.78 +0.1 2,439,436 - PS417_11325 0.78 -0.3 2,439,630 + PS417_11325 0.89 +2.0 2,439,631 - PS417_11325 0.89 +0.3 2,439,631 - PS417_11325 0.89 +0.1 2,439,631 - PS417_11325 0.89 +0.6 2,440,199 + PS417_11330 0.21 +1.8 2,440,199 + -0.4 2,440,451 + PS417_11330 0.35 -0.5 2,440,512 - PS417_11330 0.39 -0.7 2,440,580 + PS417_11330 0.43 -0.3 2,440,580 + PS417_11330 0.43 +1.2 2,440,601 + PS417_11330 0.44 +0.9 2,440,811 + PS417_11330 0.56 -2.2 2,440,811 + PS417_11330 0.56 -0.0
Or see this region's nucleotide sequence