Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_05260 and PS417_05265 are separated by 10 nucleotides PS417_05265 and PS417_05270 are separated by 42 nucleotides PS417_05270 and PS417_05275 are separated by 13 nucleotides PS417_05275 and PS417_05285 are separated by 87 nucleotides
PS417_05260: PS417_05260 - MFS transporter, at 1,167,218 to 1,168,558
_05260
PS417_05265: PS417_05265 - short-chain dehydrogenase, at 1,168,569 to 1,169,330
_05265
PS417_05270: PS417_05270 - 3-oxoacyl-ACP reductase, at 1,169,373 to 1,170,122
_05270
PS417_05275: PS417_05275 - hypothetical protein, at 1,170,136 to 1,170,429
_05275
PS417_05285: PS417_05285 - cobalamin biosynthesis protein CobW, at 1,170,517 to 1,171,491
_05285
Position (kb) 1169
1170
1171 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1168.557 kb on - strand at 1168.636 kb on - strand at 1168.668 kb on + strand, within PS417_05265 at 1168.672 kb on - strand, within PS417_05265 at 1169.001 kb on + strand, within PS417_05265 at 1169.370 kb on + strand at 1169.371 kb on - strand at 1169.803 kb on + strand, within PS417_05270 at 1169.803 kb on + strand, within PS417_05270 at 1169.803 kb on + strand, within PS417_05270 at 1169.804 kb on - strand, within PS417_05270 at 1169.804 kb on - strand, within PS417_05270 at 1169.804 kb on - strand, within PS417_05270 at 1169.804 kb on - strand, within PS417_05270 at 1169.804 kb on - strand, within PS417_05270 at 1169.807 kb on + strand, within PS417_05270 at 1169.807 kb on + strand, within PS417_05270 at 1169.808 kb on - strand, within PS417_05270 at 1169.808 kb on - strand, within PS417_05270 at 1170.131 kb on + strand at 1170.132 kb on - strand at 1170.428 kb on - strand at 1170.428 kb on - strand at 1170.489 kb on + strand at 1170.656 kb on + strand, within PS417_05285 at 1170.656 kb on + strand, within PS417_05285 at 1170.656 kb on + strand, within PS417_05285 at 1170.657 kb on - strand, within PS417_05285 at 1170.687 kb on - strand, within PS417_05285 at 1170.687 kb on - strand, within PS417_05285
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,168,557 - -0.5 1,168,636 - -0.4 1,168,668 + PS417_05265 0.13 -1.2 1,168,672 - PS417_05265 0.14 -0.9 1,169,001 + PS417_05265 0.57 +3.8 1,169,370 + +1.8 1,169,371 - -1.2 1,169,803 + PS417_05270 0.57 -1.1 1,169,803 + PS417_05270 0.57 -0.4 1,169,803 + PS417_05270 0.57 -1.5 1,169,804 - PS417_05270 0.57 +0.7 1,169,804 - PS417_05270 0.57 -2.9 1,169,804 - PS417_05270 0.57 -2.2 1,169,804 - PS417_05270 0.57 +0.6 1,169,804 - PS417_05270 0.57 +0.1 1,169,807 + PS417_05270 0.58 -1.5 1,169,807 + PS417_05270 0.58 -0.3 1,169,808 - PS417_05270 0.58 -0.5 1,169,808 - PS417_05270 0.58 +2.1 1,170,131 + +0.6 1,170,132 - +1.5 1,170,428 - +1.3 1,170,428 - -0.2 1,170,489 + +0.1 1,170,656 + PS417_05285 0.14 -0.2 1,170,656 + PS417_05285 0.14 -0.4 1,170,656 + PS417_05285 0.14 +0.3 1,170,657 - PS417_05285 0.14 -2.9 1,170,687 - PS417_05285 0.17 +0.4 1,170,687 - PS417_05285 0.17 -1.9
Or see this region's nucleotide sequence