Strain Fitness in Pseudomonas putida KT2440 around PP_4669

Experiment: Growth at pH6 and (C) Trisodium citrate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_4668 and PP_4669 are separated by 125 nucleotidesPP_4669 and PP_4670 overlap by 23 nucleotides PP_4668: PP_4668 - Transcriptional regulator, LysR family, at 5,294,519 to 5,295,469 _4668 PP_4669: PP_4669 - OmpA family protein, at 5,295,595 to 5,296,113 _4669 PP_4670: PP_4670 - diguanylate cyclase, at 5,296,091 to 5,297,362 _4670 Position (kb) 5295 5296 5297Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5294.633 kb on + strand, within PP_4668at 5294.633 kb on + strand, within PP_4668at 5294.633 kb on + strand, within PP_4668at 5294.634 kb on - strand, within PP_4668at 5294.634 kb on - strand, within PP_4668at 5294.680 kb on + strand, within PP_4668at 5294.681 kb on - strand, within PP_4668at 5294.751 kb on - strand, within PP_4668at 5294.880 kb on + strand, within PP_4668at 5294.881 kb on - strand, within PP_4668at 5294.881 kb on - strand, within PP_4668at 5294.881 kb on - strand, within PP_4668at 5295.005 kb on + strand, within PP_4668at 5295.005 kb on + strand, within PP_4668at 5295.005 kb on + strand, within PP_4668at 5295.005 kb on + strand, within PP_4668at 5295.006 kb on - strand, within PP_4668at 5295.006 kb on - strand, within PP_4668at 5295.006 kb on - strand, within PP_4668at 5295.006 kb on - strand, within PP_4668at 5295.006 kb on - strandat 5295.006 kb on - strand, within PP_4668at 5295.044 kb on + strand, within PP_4668at 5295.045 kb on - strand, within PP_4668at 5295.045 kb on - strand, within PP_4668at 5295.122 kb on + strand, within PP_4668at 5295.122 kb on + strand, within PP_4668at 5295.123 kb on - strand, within PP_4668at 5295.123 kb on - strand, within PP_4668at 5295.159 kb on - strand, within PP_4668at 5295.255 kb on + strand, within PP_4668at 5295.255 kb on + strand, within PP_4668at 5295.341 kb on + strand, within PP_4668at 5295.341 kb on + strand, within PP_4668at 5295.341 kb on + strand, within PP_4668at 5295.342 kb on - strand, within PP_4668at 5295.342 kb on - strand, within PP_4668at 5295.393 kb on - strandat 5295.498 kb on + strandat 5295.499 kb on - strandat 5295.561 kb on - strandat 5295.570 kb on + strandat 5295.570 kb on + strandat 5295.571 kb on - strandat 5295.600 kb on - strandat 5295.776 kb on + strand, within PP_4669at 5295.776 kb on + strand, within PP_4669at 5295.776 kb on + strand, within PP_4669at 5295.777 kb on - strand, within PP_4669at 5296.073 kb on - strandat 5296.073 kb on - strandat 5296.073 kb on - strandat 5296.173 kb on + strandat 5296.173 kb on + strandat 5296.173 kb on + strandat 5296.230 kb on + strand, within PP_4670at 5296.233 kb on + strand, within PP_4670at 5296.234 kb on - strand, within PP_4670at 5296.240 kb on + strand, within PP_4670at 5296.346 kb on - strand, within PP_4670at 5296.448 kb on + strand, within PP_4670at 5296.448 kb on + strand, within PP_4670at 5296.448 kb on + strand, within PP_4670at 5296.448 kb on + strand, within PP_4670at 5296.448 kb on + strand, within PP_4670at 5296.449 kb on - strand, within PP_4670at 5296.449 kb on - strand, within PP_4670at 5296.660 kb on + strand, within PP_4670at 5296.661 kb on - strand, within PP_4670at 5296.814 kb on - strand, within PP_4670at 5296.839 kb on + strand, within PP_4670at 5296.938 kb on - strand, within PP_4670at 5296.940 kb on - strand, within PP_4670at 5296.940 kb on - strand, within PP_4670

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) Trisodium citrate
remove
5,294,633 + PP_4668 0.12 -0.1
5,294,633 + PP_4668 0.12 -2.0
5,294,633 + PP_4668 0.12 -0.3
5,294,634 - PP_4668 0.12 -3.6
5,294,634 - PP_4668 0.12 -0.1
5,294,680 + PP_4668 0.17 +1.7
5,294,681 - PP_4668 0.17 -0.1
5,294,751 - PP_4668 0.24 -1.3
5,294,880 + PP_4668 0.38 -2.2
5,294,881 - PP_4668 0.38 -3.6
5,294,881 - PP_4668 0.38 -2.1
5,294,881 - PP_4668 0.38 +0.6
5,295,005 + PP_4668 0.51 +0.6
5,295,005 + PP_4668 0.51 +1.1
5,295,005 + PP_4668 0.51 -0.0
5,295,005 + PP_4668 0.51 -1.6
5,295,006 - PP_4668 0.51 -2.8
5,295,006 - PP_4668 0.51 +1.4
5,295,006 - PP_4668 0.51 +0.2
5,295,006 - PP_4668 0.51 -0.8
5,295,006 - +1.5
5,295,006 - PP_4668 0.51 +1.6
5,295,044 + PP_4668 0.55 +1.2
5,295,045 - PP_4668 0.55 -1.0
5,295,045 - PP_4668 0.55 +0.0
5,295,122 + PP_4668 0.63 +0.6
5,295,122 + PP_4668 0.63 -0.1
5,295,123 - PP_4668 0.64 +0.4
5,295,123 - PP_4668 0.64 -4.0
5,295,159 - PP_4668 0.67 -1.9
5,295,255 + PP_4668 0.77 +0.8
5,295,255 + PP_4668 0.77 -3.9
5,295,341 + PP_4668 0.86 -0.8
5,295,341 + PP_4668 0.86 +0.7
5,295,341 + PP_4668 0.86 -1.5
5,295,342 - PP_4668 0.87 +1.9
5,295,342 - PP_4668 0.87 -0.4
5,295,393 - -1.8
5,295,498 + -0.4
5,295,499 - -3.2
5,295,561 - -3.2
5,295,570 + -0.8
5,295,570 + +0.3
5,295,571 - +0.6
5,295,600 - -3.2
5,295,776 + PP_4669 0.35 -2.0
5,295,776 + PP_4669 0.35 -1.4
5,295,776 + PP_4669 0.35 -0.2
5,295,777 - PP_4669 0.35 -0.0
5,296,073 - +1.9
5,296,073 - -0.2
5,296,073 - +0.7
5,296,173 + +0.8
5,296,173 + -0.1
5,296,173 + +0.8
5,296,230 + PP_4670 0.11 -0.5
5,296,233 + PP_4670 0.11 -3.9
5,296,234 - PP_4670 0.11 -2.9
5,296,240 + PP_4670 0.12 +0.6
5,296,346 - PP_4670 0.20 +1.0
5,296,448 + PP_4670 0.28 -1.6
5,296,448 + PP_4670 0.28 -0.6
5,296,448 + PP_4670 0.28 -1.7
5,296,448 + PP_4670 0.28 +1.3
5,296,448 + PP_4670 0.28 -0.7
5,296,449 - PP_4670 0.28 +0.7
5,296,449 - PP_4670 0.28 -2.7
5,296,660 + PP_4670 0.45 +1.0
5,296,661 - PP_4670 0.45 +0.6
5,296,814 - PP_4670 0.57 +0.7
5,296,839 + PP_4670 0.59 -0.2
5,296,938 - PP_4670 0.67 +1.5
5,296,940 - PP_4670 0.67 -1.9
5,296,940 - PP_4670 0.67 +1.0

Or see this region's nucleotide sequence