Experiment: Growth at pH6 and (C) Trisodium citrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3734 and PP_3735 overlap by 1 nucleotides PP_3735 and PP_3736 are separated by 281 nucleotides
PP_3734: PP_3734 - putative ABC transporter, permease protein, at 4,260,302 to 4,262,761
_3734
PP_3735: PP_3735 - ABC transporter ATP-binding protein, at 4,262,761 to 4,263,426
_3735
PP_3736: PP_3736 - vanillate O-demethylase oxygenase subunit, at 4,263,708 to 4,264,775
_3736
Position (kb) 4262
4263
4264 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4261.946 kb on - strand, within PP_3734 at 4262.402 kb on - strand, within PP_3734 at 4262.402 kb on - strand, within PP_3734 at 4262.402 kb on - strand, within PP_3734 at 4262.402 kb on - strand, within PP_3734 at 4262.529 kb on + strand at 4262.529 kb on + strand at 4262.529 kb on + strand at 4262.529 kb on + strand at 4262.529 kb on + strand at 4262.529 kb on + strand at 4262.530 kb on - strand at 4262.530 kb on - strand at 4262.613 kb on + strand at 4262.613 kb on + strand at 4262.614 kb on - strand at 4262.614 kb on - strand at 4262.614 kb on - strand at 4263.065 kb on + strand, within PP_3735 at 4263.066 kb on - strand, within PP_3735 at 4263.066 kb on - strand, within PP_3735 at 4263.114 kb on + strand, within PP_3735 at 4263.114 kb on + strand, within PP_3735 at 4263.114 kb on + strand at 4263.114 kb on + strand, within PP_3735 at 4263.152 kb on + strand, within PP_3735 at 4263.152 kb on + strand, within PP_3735 at 4263.153 kb on - strand, within PP_3735 at 4263.243 kb on + strand, within PP_3735 at 4263.243 kb on + strand, within PP_3735 at 4263.291 kb on + strand, within PP_3735 at 4263.404 kb on + strand at 4263.422 kb on - strand at 4263.457 kb on + strand at 4263.464 kb on - strand at 4263.464 kb on - strand at 4263.464 kb on - strand at 4263.464 kb on - strand at 4263.464 kb on - strand at 4263.464 kb on - strand at 4263.464 kb on - strand at 4263.464 kb on - strand at 4263.624 kb on + strand at 4263.624 kb on + strand at 4263.624 kb on + strand at 4263.624 kb on + strand at 4263.624 kb on + strand at 4263.624 kb on + strand at 4263.624 kb on + strand at 4263.624 kb on + strand at 4263.624 kb on + strand at 4263.624 kb on + strand at 4263.624 kb on + strand at 4263.624 kb on + strand at 4263.624 kb on + strand at 4263.624 kb on + strand at 4263.624 kb on + strand at 4263.624 kb on + strand at 4263.624 kb on + strand at 4263.625 kb on - strand at 4263.625 kb on - strand at 4263.625 kb on - strand at 4263.625 kb on - strand at 4263.625 kb on - strand at 4263.625 kb on - strand at 4263.625 kb on - strand at 4263.625 kb on - strand at 4263.625 kb on - strand at 4263.625 kb on - strand at 4263.625 kb on - strand at 4263.625 kb on - strand at 4263.625 kb on - strand at 4263.625 kb on - strand at 4263.625 kb on - strand at 4263.625 kb on - strand at 4263.712 kb on - strand at 4263.729 kb on + strand at 4263.879 kb on + strand, within PP_3736 at 4264.012 kb on - strand, within PP_3736 at 4264.105 kb on - strand, within PP_3736 at 4264.182 kb on + strand, within PP_3736 at 4264.183 kb on - strand, within PP_3736 at 4264.183 kb on - strand, within PP_3736 at 4264.183 kb on - strand, within PP_3736 at 4264.382 kb on + strand, within PP_3736 at 4264.382 kb on + strand, within PP_3736 at 4264.383 kb on - strand, within PP_3736 at 4264.383 kb on - strand, within PP_3736 at 4264.383 kb on - strand, within PP_3736 at 4264.408 kb on + strand, within PP_3736
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH6 and (C) Trisodium citrate remove 4,261,946 - PP_3734 0.67 +1.5 4,262,402 - PP_3734 0.85 +0.7 4,262,402 - PP_3734 0.85 +1.1 4,262,402 - PP_3734 0.85 +1.4 4,262,402 - PP_3734 0.85 +1.1 4,262,529 + -0.3 4,262,529 + +0.3 4,262,529 + -0.4 4,262,529 + +1.5 4,262,529 + -3.9 4,262,529 + -0.6 4,262,530 - -0.7 4,262,530 - -2.2 4,262,613 + -1.1 4,262,613 + -0.9 4,262,614 - -0.0 4,262,614 - +0.9 4,262,614 - -3.3 4,263,065 + PP_3735 0.46 -0.1 4,263,066 - PP_3735 0.46 +1.1 4,263,066 - PP_3735 0.46 -1.5 4,263,114 + PP_3735 0.53 +2.9 4,263,114 + PP_3735 0.53 +1.4 4,263,114 + +2.1 4,263,114 + PP_3735 0.53 -1.4 4,263,152 + PP_3735 0.59 +1.1 4,263,152 + PP_3735 0.59 +1.2 4,263,153 - PP_3735 0.59 +1.5 4,263,243 + PP_3735 0.72 -0.6 4,263,243 + PP_3735 0.72 +1.6 4,263,291 + PP_3735 0.80 +1.1 4,263,404 + +1.4 4,263,422 - -0.2 4,263,457 + -1.2 4,263,464 - +1.2 4,263,464 - -2.1 4,263,464 - -0.4 4,263,464 - +0.6 4,263,464 - -1.0 4,263,464 - +0.4 4,263,464 - +1.5 4,263,464 - +0.6 4,263,624 + -0.4 4,263,624 + -2.0 4,263,624 + +1.0 4,263,624 + +1.5 4,263,624 + +2.8 4,263,624 + -3.7 4,263,624 + -1.7 4,263,624 + -0.1 4,263,624 + +0.1 4,263,624 + +0.6 4,263,624 + -0.2 4,263,624 + +0.3 4,263,624 + -2.4 4,263,624 + -3.6 4,263,624 + -1.1 4,263,624 + +0.8 4,263,624 + -0.6 4,263,625 - -0.3 4,263,625 - -2.9 4,263,625 - +0.8 4,263,625 - +0.7 4,263,625 - +0.3 4,263,625 - +0.4 4,263,625 - +0.2 4,263,625 - -2.5 4,263,625 - +0.1 4,263,625 - -0.8 4,263,625 - -1.0 4,263,625 - +0.5 4,263,625 - -0.0 4,263,625 - -3.1 4,263,625 - +1.5 4,263,625 - -0.1 4,263,712 - +1.3 4,263,729 + +0.1 4,263,879 + PP_3736 0.16 +0.9 4,264,012 - PP_3736 0.28 +0.3 4,264,105 - PP_3736 0.37 +0.9 4,264,182 + PP_3736 0.44 +1.3 4,264,183 - PP_3736 0.44 -3.8 4,264,183 - PP_3736 0.44 +0.2 4,264,183 - PP_3736 0.44 +1.4 4,264,382 + PP_3736 0.63 +0.2 4,264,382 + PP_3736 0.63 +0.8 4,264,383 - PP_3736 0.63 -0.3 4,264,383 - PP_3736 0.63 -0.3 4,264,383 - PP_3736 0.63 -1.3 4,264,408 + PP_3736 0.66 +0.2
Or see this region's nucleotide sequence