Experiment: Growth with no stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0022 and PP_0023 are separated by 445 nucleotides PP_0023 and PP_0024 are separated by 122 nucleotides PP_0024 and PP_0025 are separated by 442 nucleotides PP_0025 and PP_0026 are separated by 288 nucleotides
PP_0022: PP_0022 - hypothetical protein, at 26,989 to 27,153
_0022
PP_0023: PP_0023 - conserved hypothetical protein, at 27,599 to 27,727
_0023
PP_0024: PP_0024 - putative membrane-associated metal-dependent hydrolase, at 27,850 to 29,547
_0024
PP_0025: PP_0025 - hypothetical protein, at 29,990 to 30,142
_0025
PP_0026: PP_0026 - putative cobalt/cadmium/zinc exporter, at 30,431 to 31,336
_0026
Position (kb) 27
28
29
30 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 26.851 kb on + strand at 26.851 kb on + strand at 26.851 kb on + strand at 26.852 kb on - strand at 26.871 kb on + strand at 26.878 kb on + strand at 26.879 kb on - strand at 26.879 kb on - strand at 26.882 kb on + strand at 26.882 kb on + strand at 26.883 kb on - strand at 26.955 kb on + strand at 26.955 kb on + strand at 26.956 kb on - strand at 26.956 kb on - strand at 26.956 kb on - strand at 26.956 kb on - strand at 26.956 kb on - strand at 26.956 kb on - strand at 26.956 kb on - strand at 26.990 kb on + strand at 26.990 kb on + strand at 26.990 kb on + strand at 26.990 kb on + strand at 26.991 kb on - strand at 26.992 kb on + strand at 26.993 kb on - strand at 26.993 kb on - strand at 26.993 kb on - strand at 27.091 kb on - strand, within PP_0022 at 27.140 kb on + strand at 27.140 kb on + strand at 27.141 kb on - strand at 27.173 kb on - strand at 27.211 kb on - strand at 27.291 kb on + strand at 27.291 kb on + strand at 27.291 kb on + strand at 27.291 kb on + strand at 27.291 kb on + strand at 27.291 kb on + strand at 27.291 kb on + strand at 27.291 kb on + strand at 27.291 kb on + strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.321 kb on + strand at 27.322 kb on - strand at 27.322 kb on - strand at 27.322 kb on - strand at 27.432 kb on + strand at 27.433 kb on - strand at 27.462 kb on - strand at 27.476 kb on + strand at 27.476 kb on + strand at 27.600 kb on + strand at 27.601 kb on - strand at 27.766 kb on + strand at 27.766 kb on + strand at 27.766 kb on + strand at 27.766 kb on + strand at 27.767 kb on - strand at 27.767 kb on - strand at 27.770 kb on + strand at 27.770 kb on + strand at 27.770 kb on + strand at 27.770 kb on + strand at 27.770 kb on + strand at 27.771 kb on - strand at 27.771 kb on - strand at 27.774 kb on + strand at 27.775 kb on - strand at 27.775 kb on - strand at 27.863 kb on + strand at 27.863 kb on + strand at 27.864 kb on - strand at 27.864 kb on - strand at 27.864 kb on - strand at 27.885 kb on + strand at 27.885 kb on + strand at 27.886 kb on - strand at 27.886 kb on - strand at 27.886 kb on - strand at 27.886 kb on - strand at 27.886 kb on - strand at 27.917 kb on + strand at 28.054 kb on + strand, within PP_0024 at 28.055 kb on - strand, within PP_0024 at 28.055 kb on - strand, within PP_0024 at 28.094 kb on + strand, within PP_0024 at 28.108 kb on + strand, within PP_0024 at 28.108 kb on + strand, within PP_0024 at 28.108 kb on + strand, within PP_0024 at 28.108 kb on + strand, within PP_0024 at 28.109 kb on - strand, within PP_0024 at 28.109 kb on - strand, within PP_0024 at 28.109 kb on - strand, within PP_0024 at 28.112 kb on + strand, within PP_0024 at 28.113 kb on - strand, within PP_0024 at 28.113 kb on - strand, within PP_0024 at 28.154 kb on + strand, within PP_0024 at 28.155 kb on - strand, within PP_0024 at 28.155 kb on - strand, within PP_0024 at 28.196 kb on + strand, within PP_0024 at 28.217 kb on + strand, within PP_0024 at 28.217 kb on + strand, within PP_0024 at 28.217 kb on + strand, within PP_0024 at 28.217 kb on + strand, within PP_0024 at 28.217 kb on + strand, within PP_0024 at 28.218 kb on - strand, within PP_0024 at 28.218 kb on - strand, within PP_0024 at 28.226 kb on + strand, within PP_0024 at 28.244 kb on + strand, within PP_0024 at 28.244 kb on + strand, within PP_0024 at 28.269 kb on + strand, within PP_0024 at 28.269 kb on + strand, within PP_0024 at 28.269 kb on + strand, within PP_0024 at 28.269 kb on + strand, within PP_0024 at 28.270 kb on - strand, within PP_0024 at 28.337 kb on + strand, within PP_0024 at 28.337 kb on + strand, within PP_0024 at 28.337 kb on + strand, within PP_0024 at 28.337 kb on + strand, within PP_0024 at 28.337 kb on + strand at 28.337 kb on + strand, within PP_0024 at 28.338 kb on - strand, within PP_0024 at 28.338 kb on - strand, within PP_0024 at 28.338 kb on - strand, within PP_0024 at 28.338 kb on - strand, within PP_0024 at 28.341 kb on - strand, within PP_0024 at 28.341 kb on - strand, within PP_0024 at 28.341 kb on - strand, within PP_0024 at 28.341 kb on - strand, within PP_0024 at 28.341 kb on - strand, within PP_0024 at 28.364 kb on + strand, within PP_0024 at 28.364 kb on + strand, within PP_0024 at 28.364 kb on + strand, within PP_0024 at 28.365 kb on - strand, within PP_0024 at 28.365 kb on - strand, within PP_0024 at 28.440 kb on + strand, within PP_0024 at 28.440 kb on + strand, within PP_0024 at 28.440 kb on + strand, within PP_0024 at 28.440 kb on + strand, within PP_0024 at 28.441 kb on - strand, within PP_0024 at 28.441 kb on - strand, within PP_0024 at 28.441 kb on - strand, within PP_0024 at 28.441 kb on - strand, within PP_0024 at 28.441 kb on - strand, within PP_0024 at 28.613 kb on + strand, within PP_0024 at 28.614 kb on - strand, within PP_0024 at 28.695 kb on + strand, within PP_0024 at 28.695 kb on + strand, within PP_0024 at 28.695 kb on + strand at 28.695 kb on + strand, within PP_0024 at 28.696 kb on - strand, within PP_0024 at 28.696 kb on - strand, within PP_0024 at 28.696 kb on - strand, within PP_0024 at 28.714 kb on + strand, within PP_0024 at 28.715 kb on - strand, within PP_0024 at 28.790 kb on - strand, within PP_0024 at 28.807 kb on - strand, within PP_0024 at 28.831 kb on + strand, within PP_0024 at 28.832 kb on - strand, within PP_0024 at 28.832 kb on - strand, within PP_0024 at 28.832 kb on - strand, within PP_0024 at 28.832 kb on - strand, within PP_0024 at 28.842 kb on + strand, within PP_0024 at 28.842 kb on + strand, within PP_0024 at 28.842 kb on + strand, within PP_0024 at 28.863 kb on + strand, within PP_0024 at 28.863 kb on + strand, within PP_0024 at 28.864 kb on - strand, within PP_0024 at 28.864 kb on - strand, within PP_0024 at 28.889 kb on + strand, within PP_0024 at 28.917 kb on + strand, within PP_0024 at 28.917 kb on + strand, within PP_0024 at 28.918 kb on - strand, within PP_0024 at 28.918 kb on - strand, within PP_0024 at 28.967 kb on + strand, within PP_0024 at 28.967 kb on + strand, within PP_0024 at 28.967 kb on + strand, within PP_0024 at 28.968 kb on - strand, within PP_0024 at 28.968 kb on - strand, within PP_0024 at 28.968 kb on - strand, within PP_0024 at 28.968 kb on - strand, within PP_0024 at 28.968 kb on - strand, within PP_0024 at 28.968 kb on - strand, within PP_0024 at 28.976 kb on + strand, within PP_0024 at 28.976 kb on + strand, within PP_0024 at 28.999 kb on + strand, within PP_0024 at 28.999 kb on + strand, within PP_0024 at 29.000 kb on - strand, within PP_0024 at 29.000 kb on - strand, within PP_0024 at 29.090 kb on + strand, within PP_0024 at 29.090 kb on + strand, within PP_0024 at 29.091 kb on - strand, within PP_0024 at 29.195 kb on + strand, within PP_0024 at 29.196 kb on - strand, within PP_0024 at 29.229 kb on - strand, within PP_0024 at 29.229 kb on - strand, within PP_0024 at 29.255 kb on - strand, within PP_0024 at 29.266 kb on + strand, within PP_0024 at 29.267 kb on - strand, within PP_0024 at 29.311 kb on - strand, within PP_0024 at 29.327 kb on - strand, within PP_0024 at 29.327 kb on - strand, within PP_0024 at 29.327 kb on - strand, within PP_0024 at 29.327 kb on - strand, within PP_0024 at 29.329 kb on + strand, within PP_0024 at 29.329 kb on + strand, within PP_0024 at 29.330 kb on - strand, within PP_0024 at 29.381 kb on - strand at 29.453 kb on - strand at 29.569 kb on + strand at 29.582 kb on - strand at 29.586 kb on - strand at 29.586 kb on - strand at 29.586 kb on - strand at 29.593 kb on + strand at 29.603 kb on + strand at 29.604 kb on - strand at 29.689 kb on + strand at 29.689 kb on + strand at 29.692 kb on + strand at 29.692 kb on + strand at 29.693 kb on - strand at 29.711 kb on + strand at 29.854 kb on + strand at 29.855 kb on - strand at 29.857 kb on + strand at 29.891 kb on - strand at 30.009 kb on - strand, within PP_0025 at 30.131 kb on + strand at 30.132 kb on - strand at 30.170 kb on - strand at 30.179 kb on + strand at 30.179 kb on + strand at 30.179 kb on + strand at 30.179 kb on + strand at 30.179 kb on + strand at 30.180 kb on - strand at 30.180 kb on - strand at 30.374 kb on + strand at 30.374 kb on + strand at 30.374 kb on + strand at 30.375 kb on - strand at 30.375 kb on - strand at 30.375 kb on - strand at 30.381 kb on - strand at 30.381 kb on - strand at 30.381 kb on - strand at 30.381 kb on - strand at 30.384 kb on + strand at 30.384 kb on + strand at 30.384 kb on + strand at 30.384 kb on + strand at 30.385 kb on - strand at 30.385 kb on - strand at 30.428 kb on + strand at 30.428 kb on + strand at 30.428 kb on + strand at 30.428 kb on + strand at 30.428 kb on + strand at 30.428 kb on + strand at 30.429 kb on - strand at 30.429 kb on - strand at 30.429 kb on - strand at 30.429 kb on - strand at 30.429 kb on - strand at 30.465 kb on + strand at 30.490 kb on - strand at 30.490 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth with no stress remove 26,851 + -2.7 26,851 + -1.3 26,851 + -0.3 26,852 - -0.0 26,871 + +0.2 26,878 + -0.1 26,879 - -0.6 26,879 - +0.1 26,882 + -3.7 26,882 + +0.3 26,883 - -1.2 26,955 + +2.0 26,955 + -1.5 26,956 - -1.4 26,956 - +0.5 26,956 - -0.4 26,956 - -0.1 26,956 - -1.0 26,956 - +1.3 26,956 - +0.8 26,990 + -1.2 26,990 + -0.5 26,990 + -1.4 26,990 + -2.7 26,991 - -0.3 26,992 + +0.1 26,993 - -2.5 26,993 - +1.6 26,993 - -0.0 27,091 - PP_0022 0.62 -1.2 27,140 + -0.1 27,140 + -0.1 27,141 - -0.8 27,173 - -0.1 27,211 - +0.0 27,291 + -0.5 27,291 + -1.6 27,291 + +0.5 27,291 + -0.5 27,291 + -3.1 27,291 + -0.8 27,291 + +1.1 27,291 + -1.6 27,291 + +0.0 27,292 - -0.2 27,292 - +1.1 27,292 - -3.3 27,292 - -1.9 27,292 - -0.5 27,292 - -1.2 27,292 - -0.1 27,292 - -0.4 27,292 - +0.1 27,292 - -0.4 27,292 - +0.6 27,292 - +2.2 27,292 - -3.7 27,292 - +1.1 27,292 - +0.1 27,321 + +0.5 27,322 - +0.9 27,322 - -2.0 27,322 - +0.4 27,432 + +1.8 27,433 - +1.0 27,462 - -3.0 27,476 + -1.5 27,476 + +0.5 27,600 + +0.7 27,601 - -0.3 27,766 + +0.7 27,766 + -0.2 27,766 + +1.0 27,766 + +0.1 27,767 - -1.3 27,767 - -2.0 27,770 + -3.0 27,770 + -2.7 27,770 + -0.4 27,770 + +0.0 27,770 + +0.2 27,771 - +0.3 27,771 - -0.1 27,774 + -0.1 27,775 - -1.0 27,775 - +2.2 27,863 + -0.8 27,863 + -1.8 27,864 - -1.2 27,864 - -1.4 27,864 - +1.7 27,885 + -1.0 27,885 + +0.4 27,886 - -2.0 27,886 - +1.2 27,886 - +0.1 27,886 - -2.2 27,886 - +0.8 27,917 + -0.0 28,054 + PP_0024 0.12 +0.3 28,055 - PP_0024 0.12 -0.2 28,055 - PP_0024 0.12 +0.1 28,094 + PP_0024 0.14 -0.2 28,108 + PP_0024 0.15 +0.3 28,108 + PP_0024 0.15 +2.2 28,108 + PP_0024 0.15 -0.7 28,108 + PP_0024 0.15 -0.5 28,109 - PP_0024 0.15 -0.6 28,109 - PP_0024 0.15 +0.5 28,109 - PP_0024 0.15 +0.4 28,112 + PP_0024 0.15 -0.5 28,113 - PP_0024 0.15 -0.3 28,113 - PP_0024 0.15 -3.7 28,154 + PP_0024 0.18 -0.7 28,155 - PP_0024 0.18 -0.5 28,155 - PP_0024 0.18 -2.2 28,196 + PP_0024 0.20 +0.3 28,217 + PP_0024 0.22 +0.1 28,217 + PP_0024 0.22 -0.7 28,217 + PP_0024 0.22 -3.2 28,217 + PP_0024 0.22 +0.4 28,217 + PP_0024 0.22 -1.5 28,218 - PP_0024 0.22 +0.2 28,218 - PP_0024 0.22 +0.9 28,226 + PP_0024 0.22 -2.4 28,244 + PP_0024 0.23 -0.0 28,244 + PP_0024 0.23 -0.2 28,269 + PP_0024 0.25 -3.1 28,269 + PP_0024 0.25 -2.3 28,269 + PP_0024 0.25 +0.1 28,269 + PP_0024 0.25 +0.5 28,270 - PP_0024 0.25 +0.0 28,337 + PP_0024 0.29 -2.4 28,337 + PP_0024 0.29 +0.2 28,337 + PP_0024 0.29 -0.6 28,337 + PP_0024 0.29 -1.0 28,337 + -0.2 28,337 + PP_0024 0.29 +0.4 28,338 - PP_0024 0.29 -4.2 28,338 - PP_0024 0.29 -0.9 28,338 - PP_0024 0.29 +0.7 28,338 - PP_0024 0.29 -1.3 28,341 - PP_0024 0.29 -0.1 28,341 - PP_0024 0.29 +0.6 28,341 - PP_0024 0.29 -3.6 28,341 - PP_0024 0.29 +0.9 28,341 - PP_0024 0.29 -2.5 28,364 + PP_0024 0.30 -0.5 28,364 + PP_0024 0.30 -1.5 28,364 + PP_0024 0.30 +0.5 28,365 - PP_0024 0.30 +1.4 28,365 - PP_0024 0.30 +0.5 28,440 + PP_0024 0.35 -0.6 28,440 + PP_0024 0.35 -0.9 28,440 + PP_0024 0.35 -0.3 28,440 + PP_0024 0.35 -1.3 28,441 - PP_0024 0.35 +0.3 28,441 - PP_0024 0.35 +0.6 28,441 - PP_0024 0.35 +0.3 28,441 - PP_0024 0.35 +1.7 28,441 - PP_0024 0.35 -0.2 28,613 + PP_0024 0.45 +0.2 28,614 - PP_0024 0.45 +0.8 28,695 + PP_0024 0.50 -2.1 28,695 + PP_0024 0.50 -3.3 28,695 + +1.6 28,695 + PP_0024 0.50 +0.4 28,696 - PP_0024 0.50 +1.5 28,696 - PP_0024 0.50 +0.2 28,696 - PP_0024 0.50 -0.1 28,714 + PP_0024 0.51 -0.6 28,715 - PP_0024 0.51 -0.8 28,790 - PP_0024 0.55 -1.3 28,807 - PP_0024 0.56 -1.5 28,831 + PP_0024 0.58 -0.7 28,832 - PP_0024 0.58 -0.4 28,832 - PP_0024 0.58 -1.6 28,832 - PP_0024 0.58 -0.7 28,832 - PP_0024 0.58 +0.5 28,842 + PP_0024 0.58 -2.2 28,842 + PP_0024 0.58 -1.2 28,842 + PP_0024 0.58 +0.1 28,863 + PP_0024 0.60 +0.6 28,863 + PP_0024 0.60 +0.4 28,864 - PP_0024 0.60 -0.2 28,864 - PP_0024 0.60 +0.4 28,889 + PP_0024 0.61 -2.5 28,917 + PP_0024 0.63 -1.5 28,917 + PP_0024 0.63 -1.5 28,918 - PP_0024 0.63 -1.0 28,918 - PP_0024 0.63 -0.9 28,967 + PP_0024 0.66 -0.6 28,967 + PP_0024 0.66 -1.1 28,967 + PP_0024 0.66 +0.0 28,968 - PP_0024 0.66 +0.5 28,968 - PP_0024 0.66 -1.1 28,968 - PP_0024 0.66 -0.5 28,968 - PP_0024 0.66 -0.3 28,968 - PP_0024 0.66 -1.2 28,968 - PP_0024 0.66 -1.6 28,976 + PP_0024 0.66 -0.3 28,976 + PP_0024 0.66 -0.5 28,999 + PP_0024 0.68 -0.1 28,999 + PP_0024 0.68 -1.3 29,000 - PP_0024 0.68 -0.2 29,000 - PP_0024 0.68 -0.3 29,090 + PP_0024 0.73 -1.7 29,090 + PP_0024 0.73 -0.9 29,091 - PP_0024 0.73 +0.9 29,195 + PP_0024 0.79 +0.6 29,196 - PP_0024 0.79 -1.7 29,229 - PP_0024 0.81 +0.5 29,229 - PP_0024 0.81 -0.6 29,255 - PP_0024 0.83 -1.0 29,266 + PP_0024 0.83 -0.6 29,267 - PP_0024 0.83 +0.2 29,311 - PP_0024 0.86 +0.5 29,327 - PP_0024 0.87 -0.2 29,327 - PP_0024 0.87 -0.2 29,327 - PP_0024 0.87 -0.2 29,327 - PP_0024 0.87 +0.4 29,329 + PP_0024 0.87 -0.4 29,329 + PP_0024 0.87 +0.3 29,330 - PP_0024 0.87 -0.8 29,381 - -0.1 29,453 - +0.4 29,569 + -1.3 29,582 - -0.6 29,586 - -0.2 29,586 - -0.0 29,586 - +0.3 29,593 + +0.6 29,603 + -1.0 29,604 - -3.8 29,689 + +0.7 29,689 + +0.1 29,692 + -0.2 29,692 + -0.2 29,693 - +0.0 29,711 + -1.4 29,854 + -1.5 29,855 - -1.4 29,857 + +0.2 29,891 - +1.5 30,009 - PP_0025 0.12 -1.6 30,131 + +2.1 30,132 - -0.1 30,170 - -0.9 30,179 + +0.5 30,179 + -0.3 30,179 + -0.8 30,179 + +0.3 30,179 + +0.2 30,180 - +0.9 30,180 - +0.5 30,374 + -2.0 30,374 + +0.0 30,374 + +0.2 30,375 - +1.3 30,375 - +0.0 30,375 - -1.7 30,381 - -1.6 30,381 - +0.5 30,381 - +0.8 30,381 - -0.5 30,384 + -0.8 30,384 + -0.8 30,384 + -2.4 30,384 + -0.6 30,385 - -0.1 30,385 - -0.8 30,428 + +2.1 30,428 + +0.5 30,428 + +0.7 30,428 + -0.9 30,428 + +0.4 30,428 + -1.7 30,429 - -0.9 30,429 - +0.4 30,429 - +0.2 30,429 - -0.7 30,429 - -1.1 30,465 + +0.1 30,490 - +0.8 30,490 - +0.1
Or see this region's nucleotide sequence