Strain Fitness in Pseudomonas simiae WCS417 around PS417_20860

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_20850 and PS417_20855 are separated by 20 nucleotidesPS417_20855 and PS417_20860 are separated by 453 nucleotidesPS417_20860 and PS417_20865 are separated by 176 nucleotides PS417_20850: PS417_20850 - hypothetical protein, at 4,527,009 to 4,528,970 _20850 PS417_20855: PS417_20855 - hypothetical protein, at 4,528,991 to 4,529,422 _20855 PS417_20860: PS417_20860 - DNA polymerase III subunit gamma/tau, at 4,529,876 to 4,531,039 _20860 PS417_20865: PS417_20865 - NAD-dependent DNA ligase LigA, at 4,531,216 to 4,533,573 _20865 Position (kb) 4529 4530 4531 4532Strain fitness (log2 ratio) -2 -1 0 1 2at 4528.952 kb on + strandat 4528.971 kb on - strandat 4529.047 kb on + strand, within PS417_20855at 4529.048 kb on - strand, within PS417_20855at 4529.711 kb on - strandat 4529.773 kb on + strandat 4529.774 kb on - strandat 4529.774 kb on - strandat 4529.784 kb on - strandat 4529.932 kb on + strandat 4529.976 kb on + strandat 4530.087 kb on + strand, within PS417_20860at 4530.283 kb on - strand, within PS417_20860at 4530.306 kb on + strand, within PS417_20860at 4530.306 kb on + strand, within PS417_20860at 4530.382 kb on - strand, within PS417_20860at 4530.385 kb on - strand, within PS417_20860

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
remove
4,528,952 + +0.8
4,528,971 - +0.8
4,529,047 + PS417_20855 0.13 -2.4
4,529,048 - PS417_20855 0.13 -1.7
4,529,711 - -0.3
4,529,773 + +2.3
4,529,774 - +0.4
4,529,774 - +0.1
4,529,784 - -0.0
4,529,932 + +0.8
4,529,976 + -0.1
4,530,087 + PS417_20860 0.18 -0.4
4,530,283 - PS417_20860 0.35 -0.7
4,530,306 + PS417_20860 0.37 +0.4
4,530,306 + PS417_20860 0.37 +1.5
4,530,382 - PS417_20860 0.43 +1.1
4,530,385 - PS417_20860 0.44 -0.5

Or see this region's nucleotide sequence