Strain Fitness in Pseudomonas putida KT2440 around PP_0662

Experiment: Growth with no stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0660 and PP_0661 are separated by 45 nucleotidesPP_0661 and PP_0662 are separated by 24 nucleotidesPP_0662 and PP_0663 overlap by 4 nucleotidesPP_0663 and PP_0664 are separated by 198 nucleotides PP_0660: PP_0660 - S-methyl-L-methionine transporter, at 767,923 to 769,362 _0660 PP_0661: PP_0661 - putative Transcriptional regulator AmpR, at 769,408 to 770,292 _0661 PP_0662: PP_0662 - putative Threonine synthase, at 770,317 to 771,705 _0662 PP_0663: PP_0663 - Transcriptional regulator, AsnC family, at 771,702 to 772,139 _0663 PP_0664: PP_0664 - homoserine dehydrogenase, at 772,338 to 773,381 _0664 Position (kb) 770 771 772Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 769.372 kb on - strandat 769.372 kb on - strandat 769.372 kb on - strandat 769.374 kb on + strandat 769.374 kb on + strandat 769.374 kb on + strandat 769.374 kb on + strandat 769.374 kb on + strandat 769.506 kb on + strand, within PP_0661at 769.506 kb on + strand, within PP_0661at 769.615 kb on + strand, within PP_0661at 769.615 kb on + strand, within PP_0661at 769.615 kb on + strand, within PP_0661at 769.616 kb on - strand, within PP_0661at 769.638 kb on + strand, within PP_0661at 769.703 kb on + strand, within PP_0661at 769.789 kb on + strand, within PP_0661at 769.790 kb on - strand, within PP_0661at 769.790 kb on - strand, within PP_0661at 770.012 kb on - strand, within PP_0661at 770.012 kb on - strand, within PP_0661at 770.138 kb on + strand, within PP_0661at 770.290 kb on + strandat 770.291 kb on - strandat 770.295 kb on + strandat 770.295 kb on + strandat 770.295 kb on + strandat 770.295 kb on + strandat 770.295 kb on + strandat 770.295 kb on + strandat 770.295 kb on + strandat 770.295 kb on + strandat 770.296 kb on - strandat 770.296 kb on - strandat 770.296 kb on - strandat 770.299 kb on + strandat 770.299 kb on + strandat 770.299 kb on + strandat 770.299 kb on + strandat 770.300 kb on - strandat 770.300 kb on - strandat 770.300 kb on - strandat 770.300 kb on - strandat 770.300 kb on - strandat 770.300 kb on - strandat 770.300 kb on - strandat 770.300 kb on - strandat 770.303 kb on + strandat 770.304 kb on - strandat 770.304 kb on - strandat 770.304 kb on - strandat 770.323 kb on + strandat 770.324 kb on - strandat 770.324 kb on - strandat 770.324 kb on - strandat 770.324 kb on - strandat 770.404 kb on + strandat 770.404 kb on + strandat 770.526 kb on + strand, within PP_0662at 770.555 kb on - strand, within PP_0662at 770.555 kb on - strand, within PP_0662at 770.805 kb on - strand, within PP_0662at 770.805 kb on - strand, within PP_0662at 770.806 kb on + strand, within PP_0662at 770.807 kb on - strand, within PP_0662at 770.807 kb on - strand, within PP_0662at 771.014 kb on - strand, within PP_0662at 771.014 kb on - strand, within PP_0662at 771.014 kb on - strand, within PP_0662at 771.014 kb on - strand, within PP_0662at 771.014 kb on - strand, within PP_0662at 771.094 kb on + strand, within PP_0662at 771.094 kb on + strand, within PP_0662at 771.095 kb on - strand, within PP_0662at 771.095 kb on - strand, within PP_0662at 771.095 kb on - strand, within PP_0662at 771.196 kb on + strand, within PP_0662at 771.283 kb on + strand, within PP_0662at 771.283 kb on + strand, within PP_0662at 771.284 kb on - strand, within PP_0662at 771.284 kb on - strand, within PP_0662at 771.284 kb on - strand, within PP_0662at 771.394 kb on + strand, within PP_0662at 771.395 kb on - strand, within PP_0662at 771.461 kb on + strand, within PP_0662at 771.485 kb on + strand, within PP_0662at 771.486 kb on - strand, within PP_0662at 771.863 kb on + strand, within PP_0663at 771.863 kb on + strand, within PP_0663at 771.864 kb on - strand, within PP_0663at 771.864 kb on - strand, within PP_0663at 771.864 kb on - strand, within PP_0663at 771.924 kb on + strand, within PP_0663at 771.924 kb on + strand, within PP_0663at 771.931 kb on - strand, within PP_0663at 772.159 kb on + strandat 772.249 kb on + strandat 772.250 kb on - strandat 772.254 kb on - strandat 772.254 kb on - strandat 772.293 kb on + strandat 772.293 kb on + strandat 772.293 kb on + strandat 772.293 kb on + strandat 772.293 kb on + strandat 772.293 kb on + strandat 772.294 kb on - strandat 772.298 kb on + strandat 772.299 kb on - strandat 772.299 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth with no stress
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769,372 - +0.2
769,372 - +1.2
769,372 - +0.8
769,374 + +1.6
769,374 + -3.5
769,374 + +0.3
769,374 + +1.4
769,374 + -0.4
769,506 + PP_0661 0.11 -3.7
769,506 + PP_0661 0.11 -0.3
769,615 + PP_0661 0.23 -0.6
769,615 + PP_0661 0.23 +1.4
769,615 + PP_0661 0.23 -1.1
769,616 - PP_0661 0.24 -0.4
769,638 + PP_0661 0.26 -3.4
769,703 + PP_0661 0.33 +0.5
769,789 + PP_0661 0.43 -1.0
769,790 - PP_0661 0.43 +0.8
769,790 - PP_0661 0.43 +0.2
770,012 - PP_0661 0.68 +0.3
770,012 - PP_0661 0.68 +1.0
770,138 + PP_0661 0.82 +0.9
770,290 + -2.0
770,291 - -0.8
770,295 + -1.3
770,295 + -2.5
770,295 + -0.3
770,295 + -1.0
770,295 + -1.5
770,295 + +1.8
770,295 + +0.5
770,295 + -0.4
770,296 - -3.9
770,296 - -4.0
770,296 - -1.0
770,299 + +0.4
770,299 + +0.4
770,299 + +0.4
770,299 + -0.2
770,300 - -2.8
770,300 - +0.9
770,300 - -4.0
770,300 - -3.5
770,300 - +0.2
770,300 - -3.5
770,300 - +2.0
770,300 - -0.2
770,303 + -3.0
770,304 - -0.3
770,304 - +1.3
770,304 - +1.1
770,323 + +0.8
770,324 - +1.1
770,324 - -0.5
770,324 - -1.8
770,324 - -0.3
770,404 + -0.5
770,404 + -0.4
770,526 + PP_0662 0.15 -3.0
770,555 - PP_0662 0.17 +1.1
770,555 - PP_0662 0.17 +0.9
770,805 - PP_0662 0.35 -2.9
770,805 - PP_0662 0.35 +0.2
770,806 + PP_0662 0.35 +1.8
770,807 - PP_0662 0.35 -3.0
770,807 - PP_0662 0.35 +0.6
771,014 - PP_0662 0.50 +0.8
771,014 - PP_0662 0.50 -0.1
771,014 - PP_0662 0.50 -0.9
771,014 - PP_0662 0.50 -0.8
771,014 - PP_0662 0.50 -3.0
771,094 + PP_0662 0.56 +1.8
771,094 + PP_0662 0.56 +2.4
771,095 - PP_0662 0.56 +1.5
771,095 - PP_0662 0.56 +0.9
771,095 - PP_0662 0.56 -0.1
771,196 + PP_0662 0.63 +0.6
771,283 + PP_0662 0.70 +0.1
771,283 + PP_0662 0.70 -1.1
771,284 - PP_0662 0.70 +1.6
771,284 - PP_0662 0.70 +1.0
771,284 - PP_0662 0.70 +0.6
771,394 + PP_0662 0.78 +0.0
771,395 - PP_0662 0.78 -0.7
771,461 + PP_0662 0.82 +0.6
771,485 + PP_0662 0.84 -2.5
771,486 - PP_0662 0.84 +2.1
771,863 + PP_0663 0.37 +1.6
771,863 + PP_0663 0.37 -0.5
771,864 - PP_0663 0.37 +0.2
771,864 - PP_0663 0.37 +1.0
771,864 - PP_0663 0.37 +2.0
771,924 + PP_0663 0.51 +3.3
771,924 + PP_0663 0.51 +0.5
771,931 - PP_0663 0.52 +0.5
772,159 + -0.7
772,249 + +0.7
772,250 - +0.7
772,254 - -1.7
772,254 - -2.4
772,293 + +1.5
772,293 + -0.5
772,293 + -1.4
772,293 + -1.2
772,293 + +0.4
772,293 + -0.5
772,294 - +0.8
772,298 + +1.5
772,299 - -2.5
772,299 - +0.5

Or see this region's nucleotide sequence