Strain Fitness in Pseudomonas simiae WCS417 around PS417_26445

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_26440 and PS417_26445 are separated by 258 nucleotidesPS417_26445 and PS417_26450 are separated by 19 nucleotides PS417_26440: PS417_26440 - transketolase, at 5,717,335 to 5,719,332 _26440 PS417_26445: PS417_26445 - ArsR family transcriptional regulator, at 5,719,591 to 5,720,586 _26445 PS417_26450: PS417_26450 - S-adenosylmethionine synthetase, at 5,720,606 to 5,721,796 _26450 Position (kb) 5719 5720 5721Strain fitness (log2 ratio) -1 0 1 2at 5719.486 kb on + strandat 5719.486 kb on + strandat 5719.493 kb on + strandat 5719.506 kb on + strandat 5719.507 kb on - strandat 5719.507 kb on - strandat 5719.508 kb on + strandat 5719.509 kb on - strandat 5719.598 kb on + strandat 5719.598 kb on + strandat 5719.598 kb on + strandat 5719.598 kb on + strandat 5719.598 kb on + strandat 5719.602 kb on + strandat 5719.715 kb on + strand, within PS417_26445at 5719.775 kb on + strand, within PS417_26445at 5720.509 kb on + strandat 5720.509 kb on + strandat 5720.513 kb on + strandat 5720.513 kb on + strandat 5720.519 kb on + strandat 5720.523 kb on + strandat 5720.523 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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5,719,486 + -0.4
5,719,486 + -1.0
5,719,493 + +0.1
5,719,506 + -1.3
5,719,507 - +0.8
5,719,507 - +1.3
5,719,508 + +0.2
5,719,509 - -0.4
5,719,598 + -0.7
5,719,598 + +1.4
5,719,598 + +0.8
5,719,598 + +2.6
5,719,598 + -0.5
5,719,602 + +0.2
5,719,715 + PS417_26445 0.12 -0.7
5,719,775 + PS417_26445 0.18 -0.2
5,720,509 + +0.9
5,720,509 + -0.1
5,720,513 + -0.4
5,720,513 + +0.3
5,720,519 + -0.6
5,720,523 + -0.6
5,720,523 + -0.8

Or see this region's nucleotide sequence