Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04680 and PS417_04685 are separated by 263 nucleotides PS417_04685 and PS417_04690 overlap by 11 nucleotides PS417_04690 and PS417_04695 are separated by 31 nucleotides
PS417_04680: PS417_04680 - porin, at 1,037,277 to 1,038,599
_04680
PS417_04685: PS417_04685 - histidine kinase, at 1,038,863 to 1,040,227
_04685
PS417_04690: PS417_04690 - transcriptional regulator, at 1,040,217 to 1,040,894
_04690
PS417_04695: PS417_04695 - acriflavine resistance protein B, at 1,040,926 to 1,044,015
_04695
Position (kb)
1038
1039
1040
1041 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1037.863 kb on + strand, within PS417_04680 at 1037.863 kb on + strand, within PS417_04680 at 1037.863 kb on + strand, within PS417_04680 at 1037.863 kb on + strand, within PS417_04680 at 1037.863 kb on + strand, within PS417_04680 at 1037.863 kb on + strand, within PS417_04680 at 1037.863 kb on + strand, within PS417_04680 at 1037.864 kb on - strand, within PS417_04680 at 1037.864 kb on - strand, within PS417_04680 at 1037.864 kb on - strand, within PS417_04680 at 1037.869 kb on + strand, within PS417_04680 at 1037.881 kb on + strand, within PS417_04680 at 1037.881 kb on + strand, within PS417_04680 at 1037.881 kb on + strand, within PS417_04680 at 1037.881 kb on + strand at 1037.882 kb on - strand, within PS417_04680 at 1037.882 kb on - strand, within PS417_04680 at 1037.884 kb on + strand, within PS417_04680 at 1037.884 kb on + strand, within PS417_04680 at 1037.884 kb on + strand, within PS417_04680 at 1037.888 kb on - strand, within PS417_04680 at 1038.046 kb on + strand, within PS417_04680 at 1038.047 kb on - strand, within PS417_04680 at 1038.376 kb on + strand, within PS417_04680 at 1038.463 kb on + strand, within PS417_04680 at 1038.463 kb on + strand, within PS417_04680 at 1038.464 kb on - strand, within PS417_04680 at 1038.712 kb on + strand at 1038.712 kb on + strand at 1038.712 kb on + strand at 1038.712 kb on + strand at 1038.713 kb on - strand at 1038.889 kb on + strand at 1039.082 kb on + strand, within PS417_04685 at 1039.083 kb on - strand, within PS417_04685 at 1039.413 kb on + strand, within PS417_04685 at 1039.414 kb on - strand, within PS417_04685 at 1039.527 kb on + strand, within PS417_04685 at 1039.528 kb on - strand, within PS417_04685 at 1039.944 kb on + strand, within PS417_04685 at 1039.945 kb on - strand, within PS417_04685 at 1039.950 kb on + strand, within PS417_04685 at 1039.950 kb on + strand at 1039.951 kb on - strand, within PS417_04685 at 1040.218 kb on + strand at 1040.218 kb on + strand at 1040.219 kb on - strand at 1040.245 kb on + strand at 1040.245 kb on + strand at 1040.245 kb on + strand at 1040.245 kb on + strand at 1040.246 kb on - strand at 1040.748 kb on + strand, within PS417_04690 at 1040.761 kb on + strand, within PS417_04690 at 1040.762 kb on - strand, within PS417_04690 at 1040.821 kb on + strand, within PS417_04690 at 1040.822 kb on - strand, within PS417_04690 at 1040.985 kb on - strand at 1040.990 kb on + strand at 1040.990 kb on + strand at 1040.990 kb on + strand at 1040.990 kb on + strand at 1040.991 kb on - strand at 1040.991 kb on - strand at 1040.991 kb on - strand at 1040.992 kb on + strand at 1040.993 kb on - strand at 1040.993 kb on - strand at 1041.174 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,037,863 + PS417_04680 0.44 -4.0 1,037,863 + PS417_04680 0.44 -0.6 1,037,863 + PS417_04680 0.44 +0.1 1,037,863 + PS417_04680 0.44 +0.2 1,037,863 + PS417_04680 0.44 -0.5 1,037,863 + PS417_04680 0.44 +0.1 1,037,863 + PS417_04680 0.44 +0.9 1,037,864 - PS417_04680 0.44 +0.3 1,037,864 - PS417_04680 0.44 -1.2 1,037,864 - PS417_04680 0.44 -0.9 1,037,869 + PS417_04680 0.45 +0.7 1,037,881 + PS417_04680 0.46 +2.8 1,037,881 + PS417_04680 0.46 +1.0 1,037,881 + PS417_04680 0.46 -1.5 1,037,881 + +0.1 1,037,882 - PS417_04680 0.46 -0.9 1,037,882 - PS417_04680 0.46 +0.1 1,037,884 + PS417_04680 0.46 -4.1 1,037,884 + PS417_04680 0.46 +0.7 1,037,884 + PS417_04680 0.46 -2.9 1,037,888 - PS417_04680 0.46 -0.3 1,038,046 + PS417_04680 0.58 -2.1 1,038,047 - PS417_04680 0.58 +0.9 1,038,376 + PS417_04680 0.83 -1.6 1,038,463 + PS417_04680 0.90 -0.3 1,038,463 + PS417_04680 0.90 +0.0 1,038,464 - PS417_04680 0.90 +0.3 1,038,712 + -2.4 1,038,712 + +1.6 1,038,712 + +0.7 1,038,712 + +1.7 1,038,713 - +0.1 1,038,889 + -2.4 1,039,082 + PS417_04685 0.16 +2.5 1,039,083 - PS417_04685 0.16 +1.5 1,039,413 + PS417_04685 0.40 -1.4 1,039,414 - PS417_04685 0.40 +2.6 1,039,527 + PS417_04685 0.49 +0.8 1,039,528 - PS417_04685 0.49 +0.1 1,039,944 + PS417_04685 0.79 +0.4 1,039,945 - PS417_04685 0.79 +2.4 1,039,950 + PS417_04685 0.80 -2.0 1,039,950 + +0.7 1,039,951 - PS417_04685 0.80 +0.7 1,040,218 + -1.0 1,040,218 + +0.0 1,040,219 - +1.1 1,040,245 + +2.4 1,040,245 + -1.0 1,040,245 + -2.5 1,040,245 + -0.7 1,040,246 - -1.5 1,040,748 + PS417_04690 0.78 -1.0 1,040,761 + PS417_04690 0.80 -2.4 1,040,762 - PS417_04690 0.80 +0.2 1,040,821 + PS417_04690 0.89 +1.3 1,040,822 - PS417_04690 0.89 +0.6 1,040,985 - +3.2 1,040,990 + +0.7 1,040,990 + +0.4 1,040,990 + -0.1 1,040,990 + +0.7 1,040,991 - +1.3 1,040,991 - +0.9 1,040,991 - +0.7 1,040,992 + +1.5 1,040,993 - +0.5 1,040,993 - -0.7 1,041,174 - +0.0
Or see this region's nucleotide sequence