Strain Fitness in Pseudomonas simiae WCS417 around PS417_04685

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04680 and PS417_04685 are separated by 263 nucleotidesPS417_04685 and PS417_04690 overlap by 11 nucleotidesPS417_04690 and PS417_04695 are separated by 31 nucleotides PS417_04680: PS417_04680 - porin, at 1,037,277 to 1,038,599 _04680 PS417_04685: PS417_04685 - histidine kinase, at 1,038,863 to 1,040,227 _04685 PS417_04690: PS417_04690 - transcriptional regulator, at 1,040,217 to 1,040,894 _04690 PS417_04695: PS417_04695 - acriflavine resistance protein B, at 1,040,926 to 1,044,015 _04695 Position (kb) 1038 1039 1040 1041Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1037.863 kb on + strand, within PS417_04680at 1037.863 kb on + strand, within PS417_04680at 1037.863 kb on + strand, within PS417_04680at 1037.863 kb on + strand, within PS417_04680at 1037.863 kb on + strand, within PS417_04680at 1037.863 kb on + strand, within PS417_04680at 1037.863 kb on + strand, within PS417_04680at 1037.864 kb on - strand, within PS417_04680at 1037.864 kb on - strand, within PS417_04680at 1037.864 kb on - strand, within PS417_04680at 1037.869 kb on + strand, within PS417_04680at 1037.881 kb on + strand, within PS417_04680at 1037.881 kb on + strand, within PS417_04680at 1037.881 kb on + strand, within PS417_04680at 1037.881 kb on + strandat 1037.882 kb on - strand, within PS417_04680at 1037.882 kb on - strand, within PS417_04680at 1037.884 kb on + strand, within PS417_04680at 1037.884 kb on + strand, within PS417_04680at 1037.884 kb on + strand, within PS417_04680at 1037.888 kb on - strand, within PS417_04680at 1038.046 kb on + strand, within PS417_04680at 1038.047 kb on - strand, within PS417_04680at 1038.376 kb on + strand, within PS417_04680at 1038.463 kb on + strand, within PS417_04680at 1038.463 kb on + strand, within PS417_04680at 1038.464 kb on - strand, within PS417_04680at 1038.712 kb on + strandat 1038.712 kb on + strandat 1038.712 kb on + strandat 1038.712 kb on + strandat 1038.713 kb on - strandat 1038.889 kb on + strandat 1039.082 kb on + strand, within PS417_04685at 1039.083 kb on - strand, within PS417_04685at 1039.413 kb on + strand, within PS417_04685at 1039.414 kb on - strand, within PS417_04685at 1039.527 kb on + strand, within PS417_04685at 1039.528 kb on - strand, within PS417_04685at 1039.944 kb on + strand, within PS417_04685at 1039.945 kb on - strand, within PS417_04685at 1039.950 kb on + strand, within PS417_04685at 1039.950 kb on + strandat 1039.951 kb on - strand, within PS417_04685at 1040.218 kb on + strandat 1040.218 kb on + strandat 1040.219 kb on - strandat 1040.245 kb on + strandat 1040.245 kb on + strandat 1040.245 kb on + strandat 1040.245 kb on + strandat 1040.246 kb on - strandat 1040.748 kb on + strand, within PS417_04690at 1040.761 kb on + strand, within PS417_04690at 1040.762 kb on - strand, within PS417_04690at 1040.821 kb on + strand, within PS417_04690at 1040.822 kb on - strand, within PS417_04690at 1040.985 kb on - strandat 1040.990 kb on + strandat 1040.990 kb on + strandat 1040.990 kb on + strandat 1040.990 kb on + strandat 1040.991 kb on - strandat 1040.991 kb on - strandat 1040.991 kb on - strandat 1040.992 kb on + strandat 1040.993 kb on - strandat 1040.993 kb on - strandat 1041.174 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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1,037,863 + PS417_04680 0.44 -4.0
1,037,863 + PS417_04680 0.44 -0.6
1,037,863 + PS417_04680 0.44 +0.1
1,037,863 + PS417_04680 0.44 +0.2
1,037,863 + PS417_04680 0.44 -0.5
1,037,863 + PS417_04680 0.44 +0.1
1,037,863 + PS417_04680 0.44 +0.9
1,037,864 - PS417_04680 0.44 +0.3
1,037,864 - PS417_04680 0.44 -1.2
1,037,864 - PS417_04680 0.44 -0.9
1,037,869 + PS417_04680 0.45 +0.7
1,037,881 + PS417_04680 0.46 +2.8
1,037,881 + PS417_04680 0.46 +1.0
1,037,881 + PS417_04680 0.46 -1.5
1,037,881 + +0.1
1,037,882 - PS417_04680 0.46 -0.9
1,037,882 - PS417_04680 0.46 +0.1
1,037,884 + PS417_04680 0.46 -4.1
1,037,884 + PS417_04680 0.46 +0.7
1,037,884 + PS417_04680 0.46 -2.9
1,037,888 - PS417_04680 0.46 -0.3
1,038,046 + PS417_04680 0.58 -2.1
1,038,047 - PS417_04680 0.58 +0.9
1,038,376 + PS417_04680 0.83 -1.6
1,038,463 + PS417_04680 0.90 -0.3
1,038,463 + PS417_04680 0.90 +0.0
1,038,464 - PS417_04680 0.90 +0.3
1,038,712 + -2.4
1,038,712 + +1.6
1,038,712 + +0.7
1,038,712 + +1.7
1,038,713 - +0.1
1,038,889 + -2.4
1,039,082 + PS417_04685 0.16 +2.5
1,039,083 - PS417_04685 0.16 +1.5
1,039,413 + PS417_04685 0.40 -1.4
1,039,414 - PS417_04685 0.40 +2.6
1,039,527 + PS417_04685 0.49 +0.8
1,039,528 - PS417_04685 0.49 +0.1
1,039,944 + PS417_04685 0.79 +0.4
1,039,945 - PS417_04685 0.79 +2.4
1,039,950 + PS417_04685 0.80 -2.0
1,039,950 + +0.7
1,039,951 - PS417_04685 0.80 +0.7
1,040,218 + -1.0
1,040,218 + +0.0
1,040,219 - +1.1
1,040,245 + +2.4
1,040,245 + -1.0
1,040,245 + -2.5
1,040,245 + -0.7
1,040,246 - -1.5
1,040,748 + PS417_04690 0.78 -1.0
1,040,761 + PS417_04690 0.80 -2.4
1,040,762 - PS417_04690 0.80 +0.2
1,040,821 + PS417_04690 0.89 +1.3
1,040,822 - PS417_04690 0.89 +0.6
1,040,985 - +3.2
1,040,990 + +0.7
1,040,990 + +0.4
1,040,990 + -0.1
1,040,990 + +0.7
1,040,991 - +1.3
1,040,991 - +0.9
1,040,991 - +0.7
1,040,992 + +1.5
1,040,993 - +0.5
1,040,993 - -0.7
1,041,174 - +0.0

Or see this region's nucleotide sequence