Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27985 and PS417_27990 are separated by 14 nucleotides PS417_27990 and PS417_27995 are separated by 12 nucleotides PS417_27995 and PS417_28000 are separated by 5 nucleotides PS417_28000 and PS417_28005 are separated by 138 nucleotides
PS417_27985: PS417_27985 - type VI secretion protein ImpA, at 6,038,483 to 6,040,423
_27985
PS417_27990: PS417_27990 - hypothetical protein, at 6,040,438 to 6,040,872
_27990
PS417_27995: PS417_27995 - type IV secretion protein Rhs, at 6,040,885 to 6,045,279
_27995
PS417_28000: PS417_28000 - hypothetical protein, at 6,045,285 to 6,045,734
_28000
PS417_28005: PS417_28005 - integration host factor, at 6,045,873 to 6,046,148
_28005
Position (kb)
6040
6041
6042
6043
6044
6045
6046 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2
3 at 6039.980 kb on + strand, within PS417_27985 at 6039.980 kb on + strand, within PS417_27985 at 6039.981 kb on - strand, within PS417_27985 at 6039.981 kb on - strand, within PS417_27985 at 6039.981 kb on - strand, within PS417_27985 at 6039.982 kb on + strand, within PS417_27985 at 6040.274 kb on + strand at 6040.274 kb on + strand at 6040.274 kb on + strand at 6040.275 kb on - strand at 6040.507 kb on - strand, within PS417_27990 at 6040.637 kb on - strand, within PS417_27990 at 6040.754 kb on + strand, within PS417_27990 at 6040.787 kb on - strand, within PS417_27990 at 6040.884 kb on + strand at 6040.884 kb on + strand at 6040.885 kb on - strand at 6040.885 kb on - strand at 6040.992 kb on + strand at 6041.700 kb on + strand, within PS417_27995 at 6041.729 kb on + strand, within PS417_27995 at 6041.738 kb on - strand, within PS417_27995 at 6041.890 kb on + strand, within PS417_27995 at 6041.966 kb on + strand, within PS417_27995 at 6041.966 kb on + strand, within PS417_27995 at 6041.967 kb on - strand, within PS417_27995 at 6041.967 kb on - strand, within PS417_27995 at 6041.972 kb on + strand, within PS417_27995 at 6041.973 kb on - strand, within PS417_27995 at 6041.973 kb on - strand, within PS417_27995 at 6041.973 kb on - strand, within PS417_27995 at 6041.973 kb on - strand, within PS417_27995 at 6042.039 kb on + strand, within PS417_27995 at 6042.041 kb on + strand, within PS417_27995 at 6042.135 kb on - strand, within PS417_27995 at 6042.135 kb on - strand, within PS417_27995 at 6042.135 kb on - strand, within PS417_27995 at 6042.135 kb on - strand, within PS417_27995 at 6042.135 kb on - strand, within PS417_27995 at 6042.136 kb on + strand, within PS417_27995 at 6042.136 kb on + strand, within PS417_27995 at 6042.137 kb on - strand, within PS417_27995 at 6042.137 kb on - strand, within PS417_27995 at 6042.167 kb on + strand, within PS417_27995 at 6042.168 kb on - strand, within PS417_27995 at 6042.183 kb on + strand, within PS417_27995 at 6042.184 kb on - strand, within PS417_27995 at 6042.361 kb on + strand, within PS417_27995 at 6042.361 kb on + strand, within PS417_27995 at 6042.361 kb on + strand, within PS417_27995 at 6042.362 kb on - strand, within PS417_27995 at 6042.367 kb on + strand, within PS417_27995 at 6042.417 kb on - strand, within PS417_27995 at 6042.490 kb on + strand, within PS417_27995 at 6042.528 kb on - strand, within PS417_27995 at 6042.560 kb on - strand, within PS417_27995 at 6042.572 kb on - strand, within PS417_27995 at 6042.661 kb on + strand, within PS417_27995 at 6042.662 kb on - strand, within PS417_27995 at 6042.662 kb on - strand, within PS417_27995 at 6042.755 kb on - strand, within PS417_27995 at 6042.755 kb on - strand, within PS417_27995 at 6042.756 kb on + strand, within PS417_27995 at 6042.756 kb on + strand, within PS417_27995 at 6042.756 kb on + strand, within PS417_27995 at 6042.756 kb on + strand, within PS417_27995 at 6042.757 kb on - strand, within PS417_27995 at 6042.757 kb on - strand, within PS417_27995 at 6042.757 kb on - strand, within PS417_27995 at 6042.757 kb on - strand, within PS417_27995 at 6042.757 kb on - strand, within PS417_27995 at 6042.760 kb on + strand, within PS417_27995 at 6042.761 kb on - strand, within PS417_27995 at 6042.884 kb on - strand, within PS417_27995 at 6043.128 kb on + strand, within PS417_27995 at 6043.198 kb on + strand, within PS417_27995 at 6043.198 kb on + strand, within PS417_27995 at 6043.210 kb on - strand, within PS417_27995 at 6043.221 kb on - strand, within PS417_27995 at 6043.262 kb on - strand, within PS417_27995 at 6043.262 kb on - strand, within PS417_27995 at 6043.262 kb on - strand, within PS417_27995 at 6043.262 kb on - strand, within PS417_27995 at 6043.306 kb on + strand, within PS417_27995 at 6043.331 kb on - strand, within PS417_27995 at 6043.339 kb on + strand, within PS417_27995 at 6043.339 kb on + strand, within PS417_27995 at 6043.382 kb on - strand, within PS417_27995 at 6043.450 kb on + strand, within PS417_27995 at 6043.450 kb on + strand, within PS417_27995 at 6043.456 kb on + strand, within PS417_27995 at 6043.456 kb on + strand, within PS417_27995 at 6043.457 kb on - strand, within PS417_27995 at 6043.457 kb on - strand, within PS417_27995 at 6043.457 kb on - strand, within PS417_27995 at 6043.457 kb on - strand, within PS417_27995 at 6043.512 kb on + strand, within PS417_27995 at 6043.512 kb on + strand, within PS417_27995 at 6043.513 kb on - strand, within PS417_27995 at 6043.759 kb on + strand, within PS417_27995 at 6043.779 kb on - strand, within PS417_27995 at 6043.823 kb on - strand, within PS417_27995 at 6043.870 kb on - strand, within PS417_27995 at 6043.870 kb on - strand, within PS417_27995 at 6043.910 kb on + strand, within PS417_27995 at 6043.910 kb on + strand, within PS417_27995 at 6043.910 kb on + strand, within PS417_27995 at 6043.911 kb on - strand, within PS417_27995 at 6043.911 kb on - strand, within PS417_27995 at 6043.914 kb on + strand, within PS417_27995 at 6043.914 kb on + strand, within PS417_27995 at 6043.915 kb on - strand, within PS417_27995 at 6043.986 kb on + strand, within PS417_27995 at 6043.986 kb on + strand, within PS417_27995 at 6043.986 kb on + strand, within PS417_27995 at 6044.169 kb on + strand, within PS417_27995 at 6044.169 kb on + strand, within PS417_27995 at 6044.173 kb on + strand, within PS417_27995 at 6044.173 kb on + strand, within PS417_27995 at 6044.173 kb on + strand, within PS417_27995 at 6044.222 kb on + strand, within PS417_27995 at 6044.223 kb on - strand, within PS417_27995 at 6044.225 kb on + strand, within PS417_27995 at 6044.225 kb on + strand, within PS417_27995 at 6044.226 kb on - strand, within PS417_27995 at 6044.228 kb on + strand, within PS417_27995 at 6044.229 kb on - strand, within PS417_27995 at 6044.229 kb on - strand, within PS417_27995 at 6044.229 kb on - strand, within PS417_27995 at 6044.229 kb on - strand, within PS417_27995 at 6044.232 kb on + strand, within PS417_27995 at 6044.232 kb on + strand, within PS417_27995 at 6044.232 kb on + strand, within PS417_27995 at 6044.232 kb on + strand, within PS417_27995 at 6044.233 kb on - strand, within PS417_27995 at 6044.233 kb on - strand, within PS417_27995 at 6044.233 kb on - strand, within PS417_27995 at 6044.248 kb on + strand, within PS417_27995 at 6044.248 kb on + strand, within PS417_27995 at 6044.248 kb on + strand, within PS417_27995 at 6044.249 kb on - strand, within PS417_27995 at 6044.319 kb on - strand, within PS417_27995 at 6044.396 kb on - strand, within PS417_27995 at 6044.506 kb on + strand, within PS417_27995 at 6044.506 kb on + strand, within PS417_27995 at 6044.507 kb on - strand, within PS417_27995 at 6044.507 kb on - strand, within PS417_27995 at 6044.523 kb on - strand, within PS417_27995 at 6044.524 kb on + strand, within PS417_27995 at 6044.524 kb on + strand, within PS417_27995 at 6044.524 kb on + strand, within PS417_27995 at 6044.524 kb on + strand, within PS417_27995 at 6044.525 kb on - strand, within PS417_27995 at 6044.525 kb on - strand, within PS417_27995 at 6044.525 kb on - strand, within PS417_27995 at 6044.525 kb on - strand, within PS417_27995 at 6044.525 kb on - strand, within PS417_27995 at 6044.525 kb on - strand, within PS417_27995 at 6044.525 kb on - strand, within PS417_27995 at 6044.525 kb on - strand, within PS417_27995 at 6044.599 kb on + strand, within PS417_27995 at 6044.599 kb on + strand, within PS417_27995 at 6044.716 kb on + strand, within PS417_27995 at 6044.717 kb on - strand, within PS417_27995 at 6044.717 kb on - strand, within PS417_27995 at 6044.811 kb on - strand, within PS417_27995 at 6044.820 kb on + strand, within PS417_27995 at 6044.820 kb on + strand, within PS417_27995 at 6044.820 kb on + strand, within PS417_27995 at 6044.820 kb on + strand, within PS417_27995 at 6044.820 kb on + strand, within PS417_27995 at 6044.820 kb on + strand, within PS417_27995 at 6044.864 kb on - strand at 6044.868 kb on - strand at 6044.870 kb on - strand at 6045.169 kb on - strand at 6045.173 kb on - strand at 6045.211 kb on - strand at 6045.211 kb on - strand at 6045.728 kb on + strand at 6045.733 kb on - strand at 6045.786 kb on + strand at 6046.148 kb on + strand at 6046.148 kb on + strand at 6046.149 kb on - strand at 6046.180 kb on + strand at 6046.180 kb on + strand at 6046.180 kb on + strand at 6046.180 kb on + strand at 6046.180 kb on + strand at 6046.181 kb on - strand at 6046.181 kb on - strand at 6046.181 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 6,039,980 + PS417_27985 0.77 +2.3 6,039,980 + PS417_27985 0.77 +0.3 6,039,981 - PS417_27985 0.77 +0.9 6,039,981 - PS417_27985 0.77 -0.2 6,039,981 - PS417_27985 0.77 -1.3 6,039,982 + PS417_27985 0.77 -2.2 6,040,274 + -1.5 6,040,274 + +1.0 6,040,274 + +0.9 6,040,275 - -1.5 6,040,507 - PS417_27990 0.16 -0.4 6,040,637 - PS417_27990 0.46 -6.2 6,040,754 + PS417_27990 0.73 -0.3 6,040,787 - PS417_27990 0.80 -0.6 6,040,884 + -2.8 6,040,884 + -1.1 6,040,885 - +1.7 6,040,885 - -1.8 6,040,992 + -0.5 6,041,700 + PS417_27995 0.19 -1.9 6,041,729 + PS417_27995 0.19 +1.8 6,041,738 - PS417_27995 0.19 +0.0 6,041,890 + PS417_27995 0.23 -2.0 6,041,966 + PS417_27995 0.25 +0.2 6,041,966 + PS417_27995 0.25 +1.1 6,041,967 - PS417_27995 0.25 -1.2 6,041,967 - PS417_27995 0.25 +0.6 6,041,972 + PS417_27995 0.25 -1.3 6,041,973 - PS417_27995 0.25 +0.1 6,041,973 - PS417_27995 0.25 -0.5 6,041,973 - PS417_27995 0.25 +0.5 6,041,973 - PS417_27995 0.25 +0.3 6,042,039 + PS417_27995 0.26 +0.5 6,042,041 + PS417_27995 0.26 +0.5 6,042,135 - PS417_27995 0.28 -3.3 6,042,135 - PS417_27995 0.28 +1.0 6,042,135 - PS417_27995 0.28 -0.4 6,042,135 - PS417_27995 0.28 +0.2 6,042,135 - PS417_27995 0.28 -0.4 6,042,136 + PS417_27995 0.28 -0.9 6,042,136 + PS417_27995 0.28 +0.5 6,042,137 - PS417_27995 0.28 +0.5 6,042,137 - PS417_27995 0.28 -0.6 6,042,167 + PS417_27995 0.29 +2.2 6,042,168 - PS417_27995 0.29 -0.1 6,042,183 + PS417_27995 0.30 -0.3 6,042,184 - PS417_27995 0.30 +1.2 6,042,361 + PS417_27995 0.34 -0.8 6,042,361 + PS417_27995 0.34 +1.2 6,042,361 + PS417_27995 0.34 -0.3 6,042,362 - PS417_27995 0.34 +0.6 6,042,367 + PS417_27995 0.34 -1.1 6,042,417 - PS417_27995 0.35 -0.2 6,042,490 + PS417_27995 0.37 -0.0 6,042,528 - PS417_27995 0.37 -1.7 6,042,560 - PS417_27995 0.38 -3.1 6,042,572 - PS417_27995 0.38 -1.4 6,042,661 + PS417_27995 0.40 +1.9 6,042,662 - PS417_27995 0.40 +0.3 6,042,662 - PS417_27995 0.40 -0.8 6,042,755 - PS417_27995 0.43 -0.8 6,042,755 - PS417_27995 0.43 +0.3 6,042,756 + PS417_27995 0.43 +0.9 6,042,756 + PS417_27995 0.43 +0.7 6,042,756 + PS417_27995 0.43 +0.5 6,042,756 + PS417_27995 0.43 +0.3 6,042,757 - PS417_27995 0.43 -0.8 6,042,757 - PS417_27995 0.43 +0.7 6,042,757 - PS417_27995 0.43 -0.8 6,042,757 - PS417_27995 0.43 +1.2 6,042,757 - PS417_27995 0.43 +0.3 6,042,760 + PS417_27995 0.43 +2.2 6,042,761 - PS417_27995 0.43 +2.1 6,042,884 - PS417_27995 0.45 -4.7 6,043,128 + PS417_27995 0.51 +0.1 6,043,198 + PS417_27995 0.53 -0.1 6,043,198 + PS417_27995 0.53 -1.1 6,043,210 - PS417_27995 0.53 +0.8 6,043,221 - PS417_27995 0.53 -2.9 6,043,262 - PS417_27995 0.54 +0.4 6,043,262 - PS417_27995 0.54 -0.0 6,043,262 - PS417_27995 0.54 +0.2 6,043,262 - PS417_27995 0.54 +0.3 6,043,306 + PS417_27995 0.55 -0.4 6,043,331 - PS417_27995 0.56 -2.2 6,043,339 + PS417_27995 0.56 +0.1 6,043,339 + PS417_27995 0.56 -0.2 6,043,382 - PS417_27995 0.57 +0.9 6,043,450 + PS417_27995 0.58 -0.7 6,043,450 + PS417_27995 0.58 +0.1 6,043,456 + PS417_27995 0.58 +0.3 6,043,456 + PS417_27995 0.58 +0.8 6,043,457 - PS417_27995 0.59 +0.4 6,043,457 - PS417_27995 0.59 -1.0 6,043,457 - PS417_27995 0.59 +3.7 6,043,457 - PS417_27995 0.59 -0.4 6,043,512 + PS417_27995 0.60 -0.7 6,043,512 + PS417_27995 0.60 -1.1 6,043,513 - PS417_27995 0.60 -0.4 6,043,759 + PS417_27995 0.65 +2.0 6,043,779 - PS417_27995 0.66 -2.3 6,043,823 - PS417_27995 0.67 +0.1 6,043,870 - PS417_27995 0.68 +0.6 6,043,870 - PS417_27995 0.68 +0.2 6,043,910 + PS417_27995 0.69 -0.0 6,043,910 + PS417_27995 0.69 +0.7 6,043,910 + PS417_27995 0.69 -0.2 6,043,911 - PS417_27995 0.69 -1.0 6,043,911 - PS417_27995 0.69 +1.3 6,043,914 + PS417_27995 0.69 +0.5 6,043,914 + PS417_27995 0.69 +0.0 6,043,915 - PS417_27995 0.69 -0.9 6,043,986 + PS417_27995 0.71 +1.6 6,043,986 + PS417_27995 0.71 +1.4 6,043,986 + PS417_27995 0.71 +0.6 6,044,169 + PS417_27995 0.75 -0.9 6,044,169 + PS417_27995 0.75 +0.7 6,044,173 + PS417_27995 0.75 -0.1 6,044,173 + PS417_27995 0.75 -0.9 6,044,173 + PS417_27995 0.75 -1.4 6,044,222 + PS417_27995 0.76 +0.2 6,044,223 - PS417_27995 0.76 -0.1 6,044,225 + PS417_27995 0.76 -1.2 6,044,225 + PS417_27995 0.76 +3.0 6,044,226 - PS417_27995 0.76 -1.0 6,044,228 + PS417_27995 0.76 -0.3 6,044,229 - PS417_27995 0.76 -0.0 6,044,229 - PS417_27995 0.76 +1.2 6,044,229 - PS417_27995 0.76 -0.8 6,044,229 - PS417_27995 0.76 -0.4 6,044,232 + PS417_27995 0.76 -0.5 6,044,232 + PS417_27995 0.76 +0.8 6,044,232 + PS417_27995 0.76 -0.7 6,044,232 + PS417_27995 0.76 +0.3 6,044,233 - PS417_27995 0.76 -3.1 6,044,233 - PS417_27995 0.76 -0.3 6,044,233 - PS417_27995 0.76 +0.7 6,044,248 + PS417_27995 0.77 +1.4 6,044,248 + PS417_27995 0.77 -1.1 6,044,248 + PS417_27995 0.77 -0.8 6,044,249 - PS417_27995 0.77 +0.6 6,044,319 - PS417_27995 0.78 -0.4 6,044,396 - PS417_27995 0.80 +1.2 6,044,506 + PS417_27995 0.82 -3.7 6,044,506 + PS417_27995 0.82 +0.3 6,044,507 - PS417_27995 0.82 +0.0 6,044,507 - PS417_27995 0.82 -0.7 6,044,523 - PS417_27995 0.83 +0.1 6,044,524 + PS417_27995 0.83 +0.2 6,044,524 + PS417_27995 0.83 +0.4 6,044,524 + PS417_27995 0.83 -2.2 6,044,524 + PS417_27995 0.83 +0.5 6,044,525 - PS417_27995 0.83 -0.2 6,044,525 - PS417_27995 0.83 +0.6 6,044,525 - PS417_27995 0.83 +1.1 6,044,525 - PS417_27995 0.83 -2.6 6,044,525 - PS417_27995 0.83 +1.2 6,044,525 - PS417_27995 0.83 +0.6 6,044,525 - PS417_27995 0.83 -1.0 6,044,525 - PS417_27995 0.83 +0.1 6,044,599 + PS417_27995 0.85 -0.0 6,044,599 + PS417_27995 0.85 +1.4 6,044,716 + PS417_27995 0.87 +0.2 6,044,717 - PS417_27995 0.87 -1.3 6,044,717 - PS417_27995 0.87 +0.3 6,044,811 - PS417_27995 0.89 +0.1 6,044,820 + PS417_27995 0.90 -0.5 6,044,820 + PS417_27995 0.90 +1.4 6,044,820 + PS417_27995 0.90 -0.4 6,044,820 + PS417_27995 0.90 -0.1 6,044,820 + PS417_27995 0.90 -0.1 6,044,820 + PS417_27995 0.90 -0.5 6,044,864 - -1.1 6,044,868 - +0.1 6,044,870 - -0.9 6,045,169 - +0.5 6,045,173 - +0.4 6,045,211 - -0.5 6,045,211 - +0.4 6,045,728 + +0.8 6,045,733 - +2.8 6,045,786 + -0.3 6,046,148 + +0.3 6,046,148 + +0.8 6,046,149 - +2.7 6,046,180 + +0.1 6,046,180 + +0.1 6,046,180 + +0.4 6,046,180 + +0.7 6,046,180 + -0.6 6,046,181 - +1.9 6,046,181 - -1.8 6,046,181 - +0.5
Or see this region's nucleotide sequence