Strain Fitness in Pseudomonas simiae WCS417 around PS417_27955

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_27945 and PS417_27950 are separated by 54 nucleotidesPS417_27950 and PS417_27955 are separated by 2 nucleotidesPS417_27955 and PS417_27960 are separated by 172 nucleotidesPS417_27960 and PS417_27965 are separated by 90 nucleotides PS417_27945: PS417_27945 - type VI secretion protein ImpA, at 6,028,446 to 6,029,465 _27945 PS417_27950: PS417_27950 - hypothetical protein, at 6,029,520 to 6,030,026 _27950 PS417_27955: PS417_27955 - EvpB family type VI secretion protein, at 6,030,029 to 6,031,525 _27955 PS417_27960: PS417_27960 - Hcp1 family type VI secretion system effector, at 6,031,698 to 6,032,186 _27960 PS417_27965: PS417_27965 - hypothetical protein, at 6,032,277 to 6,032,792 _27965 Position (kb) 6030 6031 6032Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6029.314 kb on - strand, within PS417_27945at 6029.314 kb on - strand, within PS417_27945at 6029.584 kb on - strand, within PS417_27950at 6029.599 kb on - strand, within PS417_27950at 6029.919 kb on + strand, within PS417_27950at 6029.919 kb on + strand, within PS417_27950at 6029.920 kb on - strand, within PS417_27950at 6029.920 kb on - strand, within PS417_27950at 6030.040 kb on + strandat 6030.335 kb on + strand, within PS417_27955at 6030.335 kb on + strand, within PS417_27955at 6030.336 kb on - strand, within PS417_27955at 6030.471 kb on - strand, within PS417_27955at 6030.471 kb on - strand, within PS417_27955at 6030.483 kb on - strand, within PS417_27955at 6030.527 kb on + strand, within PS417_27955at 6030.527 kb on + strand, within PS417_27955at 6030.702 kb on - strand, within PS417_27955at 6030.857 kb on + strand, within PS417_27955at 6030.858 kb on - strand, within PS417_27955at 6030.858 kb on - strand, within PS417_27955at 6031.205 kb on + strand, within PS417_27955at 6031.205 kb on + strand, within PS417_27955at 6031.235 kb on + strand, within PS417_27955at 6031.235 kb on + strand, within PS417_27955at 6031.236 kb on - strand, within PS417_27955at 6031.323 kb on - strand, within PS417_27955at 6031.427 kb on + strandat 6031.427 kb on + strandat 6031.427 kb on + strandat 6031.428 kb on - strandat 6031.524 kb on - strandat 6031.524 kb on - strandat 6031.659 kb on + strandat 6031.878 kb on + strand, within PS417_27960at 6031.878 kb on + strand, within PS417_27960at 6031.986 kb on + strand, within PS417_27960at 6031.987 kb on - strand, within PS417_27960at 6031.987 kb on - strand, within PS417_27960at 6032.187 kb on + strandat 6032.188 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
remove
6,029,314 - PS417_27945 0.85 +2.9
6,029,314 - PS417_27945 0.85 -1.3
6,029,584 - PS417_27950 0.13 +0.5
6,029,599 - PS417_27950 0.16 +0.8
6,029,919 + PS417_27950 0.79 -0.4
6,029,919 + PS417_27950 0.79 +0.4
6,029,920 - PS417_27950 0.79 -1.5
6,029,920 - PS417_27950 0.79 +1.0
6,030,040 + +1.2
6,030,335 + PS417_27955 0.20 +0.6
6,030,335 + PS417_27955 0.20 -0.2
6,030,336 - PS417_27955 0.21 +1.8
6,030,471 - PS417_27955 0.30 -0.6
6,030,471 - PS417_27955 0.30 -0.4
6,030,483 - PS417_27955 0.30 +0.2
6,030,527 + PS417_27955 0.33 -2.6
6,030,527 + PS417_27955 0.33 +0.0
6,030,702 - PS417_27955 0.45 -1.0
6,030,857 + PS417_27955 0.55 -2.6
6,030,858 - PS417_27955 0.55 -0.2
6,030,858 - PS417_27955 0.55 -1.0
6,031,205 + PS417_27955 0.79 -3.6
6,031,205 + PS417_27955 0.79 +1.5
6,031,235 + PS417_27955 0.81 -0.5
6,031,235 + PS417_27955 0.81 -0.8
6,031,236 - PS417_27955 0.81 -0.8
6,031,323 - PS417_27955 0.86 +0.4
6,031,427 + +1.4
6,031,427 + -0.4
6,031,427 + +0.2
6,031,428 - +0.7
6,031,524 - -2.4
6,031,524 - -0.3
6,031,659 + +0.6
6,031,878 + PS417_27960 0.37 +0.4
6,031,878 + PS417_27960 0.37 -0.6
6,031,986 + PS417_27960 0.59 +0.2
6,031,987 - PS417_27960 0.59 +0.4
6,031,987 - PS417_27960 0.59 +0.6
6,032,187 + -1.2
6,032,188 - +0.8

Or see this region's nucleotide sequence