Strain Fitness in Pseudomonas simiae WCS417 around PS417_19045

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_19040 and PS417_19045 overlap by 4 nucleotides PS417_19040: PS417_19040 - aspartate racemase, at 4,120,051 to 4,121,502 _19040 PS417_19045: PS417_19045 - amino acid:proton symporter, at 4,121,499 to 4,122,761 _19045 Position (kb) 4121 4122 4123Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4120.641 kb on + strand, within PS417_19040at 4120.641 kb on + strand, within PS417_19040at 4120.648 kb on + strand, within PS417_19040at 4120.649 kb on - strand, within PS417_19040at 4120.993 kb on + strand, within PS417_19040at 4121.009 kb on + strand, within PS417_19040at 4121.009 kb on + strand, within PS417_19040at 4121.010 kb on - strand, within PS417_19040at 4121.010 kb on - strand, within PS417_19040at 4121.306 kb on + strand, within PS417_19040at 4121.306 kb on + strand, within PS417_19040at 4121.306 kb on + strand, within PS417_19040at 4121.788 kb on + strand, within PS417_19045at 4121.788 kb on + strand, within PS417_19045at 4121.825 kb on - strand, within PS417_19045at 4122.147 kb on + strand, within PS417_19045at 4122.148 kb on - strand, within PS417_19045at 4122.175 kb on + strand, within PS417_19045at 4122.233 kb on + strand, within PS417_19045at 4122.234 kb on - strand, within PS417_19045at 4122.234 kb on - strand, within PS417_19045at 4122.236 kb on - strand, within PS417_19045at 4122.423 kb on - strand, within PS417_19045at 4122.734 kb on + strandat 4122.734 kb on + strandat 4122.790 kb on + strandat 4122.790 kb on + strandat 4122.790 kb on + strandat 4122.791 kb on - strandat 4122.791 kb on - strandat 4122.791 kb on - strandat 4122.791 kb on - strandat 4122.805 kb on - strandat 4122.904 kb on - strandat 4123.317 kb on + strandat 4123.317 kb on + strandat 4123.532 kb on - strandat 4123.746 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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4,120,641 + PS417_19040 0.41 -3.7
4,120,641 + PS417_19040 0.41 -1.1
4,120,648 + PS417_19040 0.41 +1.8
4,120,649 - PS417_19040 0.41 +0.2
4,120,993 + PS417_19040 0.65 -0.1
4,121,009 + PS417_19040 0.66 -1.2
4,121,009 + PS417_19040 0.66 -0.5
4,121,010 - PS417_19040 0.66 +0.2
4,121,010 - PS417_19040 0.66 +1.7
4,121,306 + PS417_19040 0.86 -0.2
4,121,306 + PS417_19040 0.86 -1.6
4,121,306 + PS417_19040 0.86 -2.7
4,121,788 + PS417_19045 0.23 -1.1
4,121,788 + PS417_19045 0.23 +0.4
4,121,825 - PS417_19045 0.26 +0.3
4,122,147 + PS417_19045 0.51 -0.8
4,122,148 - PS417_19045 0.51 +0.8
4,122,175 + PS417_19045 0.54 +0.3
4,122,233 + PS417_19045 0.58 -2.2
4,122,234 - PS417_19045 0.58 -0.2
4,122,234 - PS417_19045 0.58 -2.4
4,122,236 - PS417_19045 0.58 -3.0
4,122,423 - PS417_19045 0.73 -0.3
4,122,734 + -0.1
4,122,734 + -2.0
4,122,790 + +0.8
4,122,790 + -0.7
4,122,790 + +0.2
4,122,791 - +0.3
4,122,791 - -0.6
4,122,791 - +1.8
4,122,791 - -0.2
4,122,805 - +0.2
4,122,904 - -2.1
4,123,317 + -0.8
4,123,317 + +0.5
4,123,532 - -0.7
4,123,746 + +0.5

Or see this region's nucleotide sequence