Strain Fitness in Pseudomonas simiae WCS417 around PS417_18920

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18910 and PS417_18915 overlap by 4 nucleotidesPS417_18915 and PS417_18920 are separated by 9 nucleotidesPS417_18920 and PS417_18925 are separated by 54 nucleotidesPS417_18925 and PS417_18930 are separated by 28 nucleotides PS417_18910: PS417_18910 - acetylornithine deacetylase, at 4,095,905 to 4,097,062 _18910 PS417_18915: PS417_18915 - hypothetical protein, at 4,097,059 to 4,097,733 _18915 PS417_18920: PS417_18920 - hypothetical protein, at 4,097,743 to 4,098,474 _18920 PS417_18925: PS417_18925 - flagellar motor switch protein FliY, at 4,098,529 to 4,099,359 _18925 PS417_18930: PS417_18930 - restriction endonuclease subunit S, at 4,099,388 to 4,100,260 _18930 Position (kb) 4097 4098 4099Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4096.750 kb on - strand, within PS417_18910at 4096.750 kb on - strand, within PS417_18910at 4096.779 kb on + strand, within PS417_18910at 4096.936 kb on - strand, within PS417_18910at 4096.971 kb on + strandat 4096.972 kb on - strandat 4097.124 kb on - strandat 4097.385 kb on + strand, within PS417_18915at 4097.386 kb on - strand, within PS417_18915at 4097.821 kb on - strand, within PS417_18920at 4097.821 kb on - strand, within PS417_18920at 4098.127 kb on - strand, within PS417_18920at 4098.310 kb on - strand, within PS417_18920at 4098.530 kb on + strandat 4098.531 kb on - strandat 4098.581 kb on + strandat 4098.875 kb on + strand, within PS417_18925at 4099.026 kb on + strand, within PS417_18925at 4099.027 kb on - strand, within PS417_18925at 4099.027 kb on - strand, within PS417_18925at 4099.058 kb on + strand, within PS417_18925at 4099.058 kb on + strand, within PS417_18925at 4099.058 kb on + strand, within PS417_18925at 4099.059 kb on - strand, within PS417_18925at 4099.059 kb on - strand, within PS417_18925at 4099.059 kb on - strand, within PS417_18925at 4099.214 kb on + strand, within PS417_18925at 4099.214 kb on + strand, within PS417_18925at 4099.214 kb on + strand, within PS417_18925at 4099.215 kb on - strand, within PS417_18925at 4099.220 kb on + strand, within PS417_18925at 4099.339 kb on - strandat 4099.367 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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4,096,750 - PS417_18910 0.73 -2.8
4,096,750 - PS417_18910 0.73 -0.7
4,096,779 + PS417_18910 0.75 +0.5
4,096,936 - PS417_18910 0.89 +0.2
4,096,971 + -2.3
4,096,972 - -3.5
4,097,124 - +0.6
4,097,385 + PS417_18915 0.48 +0.5
4,097,386 - PS417_18915 0.48 -0.5
4,097,821 - PS417_18920 0.11 -1.3
4,097,821 - PS417_18920 0.11 -2.4
4,098,127 - PS417_18920 0.52 +0.2
4,098,310 - PS417_18920 0.77 -0.7
4,098,530 + +1.7
4,098,531 - -2.5
4,098,581 + -1.4
4,098,875 + PS417_18925 0.42 +0.1
4,099,026 + PS417_18925 0.60 -0.0
4,099,027 - PS417_18925 0.60 -0.3
4,099,027 - PS417_18925 0.60 +2.0
4,099,058 + PS417_18925 0.64 +0.7
4,099,058 + PS417_18925 0.64 -0.1
4,099,058 + PS417_18925 0.64 -0.4
4,099,059 - PS417_18925 0.64 +0.2
4,099,059 - PS417_18925 0.64 -1.0
4,099,059 - PS417_18925 0.64 -1.4
4,099,214 + PS417_18925 0.82 -0.1
4,099,214 + PS417_18925 0.82 +1.5
4,099,214 + PS417_18925 0.82 +0.6
4,099,215 - PS417_18925 0.83 -0.1
4,099,220 + PS417_18925 0.83 -0.2
4,099,339 - +1.3
4,099,367 - +1.1

Or see this region's nucleotide sequence