Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17115 and PS417_17120 are separated by 39 nucleotides PS417_17120 and PS417_17125 are separated by 116 nucleotides PS417_17125 and PS417_17130 are separated by 109 nucleotides
PS417_17115: PS417_17115 - ATPase, at 3,737,137 to 3,738,231
_17115
PS417_17120: PS417_17120 - protein kinase, at 3,738,271 to 3,739,563
_17120
PS417_17125: PS417_17125 - transcriptional regulator, at 3,739,680 to 3,740,387
_17125
PS417_17130: PS417_17130 - MFS transporter, at 3,740,497 to 3,741,822
_17130
Position (kb)
3738
3739
3740 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1
2 at 3737.455 kb on - strand, within PS417_17115 at 3737.636 kb on - strand, within PS417_17115 at 3737.669 kb on - strand, within PS417_17115 at 3737.971 kb on + strand, within PS417_17115 at 3737.972 kb on - strand, within PS417_17115 at 3737.972 kb on - strand, within PS417_17115 at 3737.992 kb on + strand at 3737.992 kb on + strand, within PS417_17115 at 3738.060 kb on + strand, within PS417_17115 at 3738.083 kb on - strand, within PS417_17115 at 3738.083 kb on - strand, within PS417_17115 at 3738.276 kb on + strand at 3738.809 kb on - strand, within PS417_17120 at 3738.976 kb on + strand, within PS417_17120 at 3738.976 kb on + strand, within PS417_17120 at 3739.183 kb on + strand, within PS417_17120 at 3739.184 kb on - strand, within PS417_17120 at 3739.184 kb on - strand, within PS417_17120 at 3739.291 kb on + strand, within PS417_17120 at 3739.302 kb on + strand, within PS417_17120 at 3739.681 kb on + strand at 3739.801 kb on + strand, within PS417_17125 at 3739.801 kb on + strand, within PS417_17125 at 3739.802 kb on - strand, within PS417_17125 at 3740.075 kb on + strand, within PS417_17125 at 3740.140 kb on + strand, within PS417_17125 at 3740.360 kb on + strand at 3740.452 kb on - strand at 3740.470 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,737,455 - PS417_17115 0.29 +1.7 3,737,636 - PS417_17115 0.46 +0.2 3,737,669 - PS417_17115 0.49 +0.6 3,737,971 + PS417_17115 0.76 +0.4 3,737,972 - PS417_17115 0.76 -0.5 3,737,972 - PS417_17115 0.76 +0.5 3,737,992 + -1.7 3,737,992 + PS417_17115 0.78 +0.4 3,738,060 + PS417_17115 0.84 +1.0 3,738,083 - PS417_17115 0.86 -0.1 3,738,083 - PS417_17115 0.86 +0.9 3,738,276 + -2.2 3,738,809 - PS417_17120 0.42 -0.3 3,738,976 + PS417_17120 0.55 +1.6 3,738,976 + PS417_17120 0.55 +0.7 3,739,183 + PS417_17120 0.71 +0.5 3,739,184 - PS417_17120 0.71 -1.7 3,739,184 - PS417_17120 0.71 +1.5 3,739,291 + PS417_17120 0.79 +1.8 3,739,302 + PS417_17120 0.80 +1.3 3,739,681 + -0.4 3,739,801 + PS417_17125 0.17 -1.3 3,739,801 + PS417_17125 0.17 -0.1 3,739,802 - PS417_17125 0.17 +1.5 3,740,075 + PS417_17125 0.56 +0.6 3,740,140 + PS417_17125 0.65 +0.3 3,740,360 + -7.6 3,740,452 - -1.3 3,740,470 - +1.3
Or see this region's nucleotide sequence