Strain Fitness in Pseudomonas simiae WCS417 around PS417_17120

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17115 and PS417_17120 are separated by 39 nucleotidesPS417_17120 and PS417_17125 are separated by 116 nucleotidesPS417_17125 and PS417_17130 are separated by 109 nucleotides PS417_17115: PS417_17115 - ATPase, at 3,737,137 to 3,738,231 _17115 PS417_17120: PS417_17120 - protein kinase, at 3,738,271 to 3,739,563 _17120 PS417_17125: PS417_17125 - transcriptional regulator, at 3,739,680 to 3,740,387 _17125 PS417_17130: PS417_17130 - MFS transporter, at 3,740,497 to 3,741,822 _17130 Position (kb) 3738 3739 3740Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 3737.455 kb on - strand, within PS417_17115at 3737.636 kb on - strand, within PS417_17115at 3737.669 kb on - strand, within PS417_17115at 3737.971 kb on + strand, within PS417_17115at 3737.972 kb on - strand, within PS417_17115at 3737.972 kb on - strand, within PS417_17115at 3737.992 kb on + strandat 3737.992 kb on + strand, within PS417_17115at 3738.060 kb on + strand, within PS417_17115at 3738.083 kb on - strand, within PS417_17115at 3738.083 kb on - strand, within PS417_17115at 3738.276 kb on + strandat 3738.809 kb on - strand, within PS417_17120at 3738.976 kb on + strand, within PS417_17120at 3738.976 kb on + strand, within PS417_17120at 3739.183 kb on + strand, within PS417_17120at 3739.184 kb on - strand, within PS417_17120at 3739.184 kb on - strand, within PS417_17120at 3739.291 kb on + strand, within PS417_17120at 3739.302 kb on + strand, within PS417_17120at 3739.681 kb on + strandat 3739.801 kb on + strand, within PS417_17125at 3739.801 kb on + strand, within PS417_17125at 3739.802 kb on - strand, within PS417_17125at 3740.075 kb on + strand, within PS417_17125at 3740.140 kb on + strand, within PS417_17125at 3740.360 kb on + strandat 3740.452 kb on - strandat 3740.470 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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3,737,455 - PS417_17115 0.29 +1.7
3,737,636 - PS417_17115 0.46 +0.2
3,737,669 - PS417_17115 0.49 +0.6
3,737,971 + PS417_17115 0.76 +0.4
3,737,972 - PS417_17115 0.76 -0.5
3,737,972 - PS417_17115 0.76 +0.5
3,737,992 + -1.7
3,737,992 + PS417_17115 0.78 +0.4
3,738,060 + PS417_17115 0.84 +1.0
3,738,083 - PS417_17115 0.86 -0.1
3,738,083 - PS417_17115 0.86 +0.9
3,738,276 + -2.2
3,738,809 - PS417_17120 0.42 -0.3
3,738,976 + PS417_17120 0.55 +1.6
3,738,976 + PS417_17120 0.55 +0.7
3,739,183 + PS417_17120 0.71 +0.5
3,739,184 - PS417_17120 0.71 -1.7
3,739,184 - PS417_17120 0.71 +1.5
3,739,291 + PS417_17120 0.79 +1.8
3,739,302 + PS417_17120 0.80 +1.3
3,739,681 + -0.4
3,739,801 + PS417_17125 0.17 -1.3
3,739,801 + PS417_17125 0.17 -0.1
3,739,802 - PS417_17125 0.17 +1.5
3,740,075 + PS417_17125 0.56 +0.6
3,740,140 + PS417_17125 0.65 +0.3
3,740,360 + -7.6
3,740,452 - -1.3
3,740,470 - +1.3

Or see this region's nucleotide sequence