Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_10770 and PS417_10775 are separated by 79 nucleotides PS417_10775 and PS417_10785 are separated by 456 nucleotides
PS417_10770: PS417_10770 - transglycosylase, at 2,299,741 to 2,303,790
_10770
PS417_10775: PS417_10775 - hypothetical protein, at 2,303,870 to 2,304,421
_10775
PS417_10785: PS417_10785 - hypothetical protein, at 2,304,878 to 2,305,825
_10785
Position (kb)
2303
2304
2305 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2302.963 kb on - strand, within PS417_10770 at 2302.999 kb on + strand, within PS417_10770 at 2302.999 kb on + strand, within PS417_10770 at 2302.999 kb on + strand, within PS417_10770 at 2303.000 kb on - strand, within PS417_10770 at 2303.000 kb on - strand, within PS417_10770 at 2303.283 kb on + strand, within PS417_10770 at 2303.284 kb on - strand, within PS417_10770 at 2303.287 kb on + strand, within PS417_10770 at 2303.287 kb on + strand, within PS417_10770 at 2303.533 kb on + strand at 2303.534 kb on - strand at 2303.580 kb on - strand at 2303.668 kb on - strand at 2303.683 kb on + strand at 2303.684 kb on - strand at 2303.754 kb on + strand at 2303.755 kb on - strand at 2303.778 kb on - strand at 2303.801 kb on + strand at 2303.871 kb on + strand at 2303.886 kb on + strand at 2303.887 kb on - strand at 2303.887 kb on - strand at 2303.887 kb on - strand at 2303.887 kb on - strand at 2303.907 kb on - strand at 2303.907 kb on - strand at 2303.950 kb on + strand, within PS417_10775 at 2303.974 kb on - strand, within PS417_10775 at 2304.003 kb on - strand, within PS417_10775 at 2304.063 kb on + strand, within PS417_10775 at 2304.063 kb on + strand, within PS417_10775 at 2304.133 kb on + strand, within PS417_10775 at 2304.134 kb on - strand, within PS417_10775 at 2304.134 kb on - strand, within PS417_10775 at 2304.177 kb on - strand, within PS417_10775 at 2304.196 kb on - strand, within PS417_10775 at 2304.203 kb on + strand, within PS417_10775 at 2304.229 kb on + strand, within PS417_10775 at 2304.230 kb on - strand, within PS417_10775 at 2304.239 kb on + strand, within PS417_10775 at 2304.239 kb on + strand, within PS417_10775 at 2304.253 kb on + strand at 2304.254 kb on - strand at 2304.404 kb on + strand at 2304.405 kb on - strand at 2304.444 kb on + strand at 2304.463 kb on - strand at 2304.504 kb on + strand at 2304.504 kb on + strand at 2304.507 kb on + strand at 2304.508 kb on - strand at 2304.527 kb on + strand at 2304.573 kb on - strand at 2304.580 kb on + strand at 2304.581 kb on - strand at 2304.606 kb on + strand at 2304.774 kb on + strand at 2304.774 kb on + strand at 2304.775 kb on - strand at 2304.775 kb on - strand at 2304.843 kb on - strand at 2304.894 kb on + strand at 2305.013 kb on + strand, within PS417_10785 at 2305.031 kb on - strand, within PS417_10785 at 2305.065 kb on + strand, within PS417_10785 at 2305.066 kb on - strand, within PS417_10785 at 2305.080 kb on + strand at 2305.080 kb on + strand at 2305.081 kb on - strand, within PS417_10785 at 2305.291 kb on + strand, within PS417_10785 at 2305.293 kb on + strand, within PS417_10785 at 2305.302 kb on + strand, within PS417_10785 at 2305.306 kb on + strand, within PS417_10785 at 2305.306 kb on + strand, within PS417_10785 at 2305.306 kb on + strand, within PS417_10785 at 2305.344 kb on + strand, within PS417_10785 at 2305.345 kb on - strand, within PS417_10785 at 2305.345 kb on - strand, within PS417_10785 at 2305.345 kb on - strand, within PS417_10785 at 2305.365 kb on + strand, within PS417_10785 at 2305.365 kb on + strand, within PS417_10785 at 2305.377 kb on + strand, within PS417_10785 at 2305.378 kb on - strand, within PS417_10785 at 2305.409 kb on - strand, within PS417_10785
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,302,963 - PS417_10770 0.80 +0.1 2,302,999 + PS417_10770 0.80 -0.6 2,302,999 + PS417_10770 0.80 +1.6 2,302,999 + PS417_10770 0.80 -0.5 2,303,000 - PS417_10770 0.80 -0.2 2,303,000 - PS417_10770 0.80 -0.1 2,303,283 + PS417_10770 0.87 -0.2 2,303,284 - PS417_10770 0.87 +2.1 2,303,287 + PS417_10770 0.88 +0.3 2,303,287 + PS417_10770 0.88 -0.2 2,303,533 + +0.4 2,303,534 - -1.2 2,303,580 - +0.3 2,303,668 - -1.3 2,303,683 + +0.6 2,303,684 - +0.2 2,303,754 + -0.1 2,303,755 - +0.6 2,303,778 - -0.2 2,303,801 + -0.3 2,303,871 + +0.1 2,303,886 + +0.6 2,303,887 - +0.4 2,303,887 - +0.1 2,303,887 - -1.0 2,303,887 - +1.8 2,303,907 - +0.2 2,303,907 - +1.1 2,303,950 + PS417_10775 0.14 -3.5 2,303,974 - PS417_10775 0.19 +1.0 2,304,003 - PS417_10775 0.24 -0.9 2,304,063 + PS417_10775 0.35 +0.1 2,304,063 + PS417_10775 0.35 -0.9 2,304,133 + PS417_10775 0.48 -0.6 2,304,134 - PS417_10775 0.48 +0.3 2,304,134 - PS417_10775 0.48 +0.6 2,304,177 - PS417_10775 0.56 -1.1 2,304,196 - PS417_10775 0.59 +0.8 2,304,203 + PS417_10775 0.60 -2.4 2,304,229 + PS417_10775 0.65 -0.5 2,304,230 - PS417_10775 0.65 -3.2 2,304,239 + PS417_10775 0.67 -0.0 2,304,239 + PS417_10775 0.67 -0.2 2,304,253 + +2.1 2,304,254 - -0.6 2,304,404 + +0.1 2,304,405 - -1.6 2,304,444 + -0.9 2,304,463 - +0.6 2,304,504 + -0.2 2,304,504 + +1.0 2,304,507 + -2.8 2,304,508 - +0.2 2,304,527 + -0.6 2,304,573 - +0.2 2,304,580 + +3.0 2,304,581 - -0.7 2,304,606 + +0.7 2,304,774 + +0.7 2,304,774 + -0.5 2,304,775 - -1.8 2,304,775 - +0.0 2,304,843 - +0.8 2,304,894 + -0.8 2,305,013 + PS417_10785 0.14 -0.7 2,305,031 - PS417_10785 0.16 +0.5 2,305,065 + PS417_10785 0.20 +0.5 2,305,066 - PS417_10785 0.20 -0.2 2,305,080 + -0.9 2,305,080 + +1.5 2,305,081 - PS417_10785 0.21 +0.2 2,305,291 + PS417_10785 0.44 +0.1 2,305,293 + PS417_10785 0.44 -1.1 2,305,302 + PS417_10785 0.45 +0.3 2,305,306 + PS417_10785 0.45 -0.4 2,305,306 + PS417_10785 0.45 +0.2 2,305,306 + PS417_10785 0.45 -1.6 2,305,344 + PS417_10785 0.49 -2.2 2,305,345 - PS417_10785 0.49 -3.6 2,305,345 - PS417_10785 0.49 -0.5 2,305,345 - PS417_10785 0.49 -0.8 2,305,365 + PS417_10785 0.51 -0.6 2,305,365 + PS417_10785 0.51 -0.9 2,305,377 + PS417_10785 0.53 +0.5 2,305,378 - PS417_10785 0.53 -0.1 2,305,409 - PS417_10785 0.56 +1.2
Or see this region's nucleotide sequence